PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938559.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

SRS

Protein Properties

Length: 334aa MW: 34429.2 Da PI: 8.3377

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938559.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.2	2.5e-69	111	271	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 g ++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq +++ a + a +sa+++a+k++r +s++++++s+t++s++++++ XP_010938559.1 111 GPSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQFATSVAGAAAGSSASTSAPKKPRLITSQTTTTASHTSTSNTTPPR 205 5679*************************************************999999999*************************** PP DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++tss lP +v+++avf+cvrv+s+ddg++e+aYq+ v+igGhvfkG+LydqG+++ XP_010938559.1 206 SFDTSSshqdatfresLPGHVRAPAVFKCVRVTSMDDGKDEYAYQAMVKIGGHVFKGFLYDQGVDD 271 999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-62	113	270	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.3E-27	114	156	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.0E-28	222	269	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGMVGLRDVL VVAPAGSFHS QYHEPLPSSA EHPIIPLLTA APCLVDEAHD GGRPKPAGGI 60 HLWQTQPPPP PQNPNSNPNP SLSYHKKPIP MLDAASILGG AGGIGAAGGG GPSTCQDCGN 120 QAKKDCSHRR CRTCCKSRGF DCSTHVKSTW VPAARRRERQ FATSVAGAAA GSSASTSAPK 180 KPRLITSQTT TTASHTSTSN TTPPRSFDTS SSHQDATFRE SLPGHVRAPA VFKCVRVTSM 240 DDGKDEYAYQ AMVKIGGHVF KGFLYDQGVD DGRGEASTSD NAIPNISELH LGGAGTAGGG 300 RNGSSSAPMI PSDDYGGGGG GLFGGTANYG NPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010938559.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	3e-70	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2H3XD55	1e-165	A0A2H3XD55_PHODC; protein LATERAL ROOT PRIMORDIUM 1 isoform X1
STRING	XP_008782017.1	1e-166	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	5e-62	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]