PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938478.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 463aa    MW: 49816.9 Da    PI: 7.4333
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938478.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.3e-104167127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C ++ rtG C yG+rC+++H+p
  XP_010938478.1 41 PGEPDCAYYIRTGSCGYGERCRYNHPP 67
                    5789*********************96 PP
2zf-CCCH37.83.2e-1289113327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C ++++tGtCk+G++Ck++H++
  XP_010938478.1  89 QPVCEYYMKTGTCKFGSTCKYHHPR 113
                     689********************96 PP
3zf-CCCH406.3e-13134159227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G++CkF+H++
  XP_010938478.1 134 GEKECSYYMKTGQCKFGSTCKFHHPQ 159
                     7899********************97 PP
4zf-CCCH391.3e-12289315127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f++rtG CkyG +Ck++H++
  XP_010938478.1 289 PGQPECQFYMRTGDCKYGVTCKYHHPR 315
                     5789*********************96 PP
5zf-CCCH31.72.6e-10338360426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +C f+a+ G Ck+G++CkF H+
  XP_010938478.1 338 QICAFYAQHGVCKFGPTCKFDHP 360
                     58********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5114068IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-54067IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-74267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-54568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-44666IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-686113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.90687114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-688113IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-1089113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-591113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887132160IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6132159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5134159IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4138157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802288316IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-6288315IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10290315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5292316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4294315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098334362IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6334361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6336364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5338359IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-8338360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MELYGRSPAA EGAYPDPDTG LEESMWRLGL AGGDLPYPER PGEPDCAYYI RTGSCGYGER  60
CRYNHPPDRG ALARSGRTGV VEYPEHVGQP VCEYYMKTGT CKFGSTCKYH HPRQGGGSEQ  120
PVLLNYCGYP LRPGEKECSY YMKTGQCKFG STCKFHHPQL GGASMPPASM FYPTVQPPSI  180
PSPHQYPPLA SWEVGRPSVL PGTYMPGSYG PMLLSPGVVP VQGWGPYPAP LSSVVSPGGQ  240
QTVQTGPLYG PSNQVNTSVP AYQVPYTSFS SSAGPSSSSE REQMFPERPG QPECQFYMRT  300
GDCKYGVTCK YHHPRDWSIP KTNCVLSPLG LPLRPGAQIC AFYAQHGVCK FGPTCKFDHP  360
VGTLSYSPSA SSLSDMPVAP YPIGFSVATL APSSSSSDLR HEFISSKESF SSQMPLFDNT  420
SSGSVGSIFS RSSFLPHTLI QPQASMSSSS SNTAHGGEIS SSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938478.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW21e-180C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A2H3YBG00.0A0A2H3YBG0_PHODC; zinc finger CCCH domain-containing protein 6-like isoform X1
STRINGXP_008796231.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-143C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]