PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938434.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 1056aa MW: 116454 Da PI: 9.2201

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938434.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20	1.2e-06	73	129	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ ++++F + ++ ++e +e+++ +g+t +qV+ +F +R + +k XP_010938434.1 73 KKPRDLLNPKAVTYMQSVFSVKDTIGKKETREISALCGITVTQVREFFAAQRSRVRK 129 79999************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.908	70	130	IPR001356	Homeobox domain
SMART	SM00389	4.0E-4	72	134	IPR001356	Homeobox domain
CDD	cd00086	5.21E-4	73	129	No hit	No description
SuperFamily	SSF46689	3.46E-6	73	134	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-5	73	137	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	1.1E-5	253	339	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	3.27E-6	256	343	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence Send to blast
MALVPGVSEG AIVELDVGKS VESLAALLDS QRELFHSQID HFQKLVVAQC KLTGVNPLSQ 60 EMAAGALSIK IGKKPRDLLN PKAVTYMQSV FSVKDTIGKK ETREISALCG ITVTQVREFF 120 AAQRSRVRKL VHVSQEKAMR VEASRTSSNG CSSSSVQSIS AETTVIREQI PVPESAMVIN 180 SLRDGQQDTL ISTELKNTEE GPSCSALEET YPGIDSNDKK FLDNIFNLMR KEETFSGQVK 240 LVEWILQIHN STVLIWFLTK GGLTILATWL SQAAHEEQTT VLLVIFKVLC HLPLHKALPV 300 QMSAILQTVN RLRFYRTSDI SGRAKTLLSR WSKLFVRTQA LKKPLFSSSK DSQKEIIRKQ 360 RISEILSDES WHFKIDIPED ILALNADLEN NRKSESKQPL KLLPSSTDVL SKKHGRSVSL 420 SKIKERRKVL LVEQPDCKTS GRSVQVARAV PSNHSRPMSA DDIQKAKMRA MFMQNKYGKA 480 DMSNSENKPQ KTEDNHVPSP SQTSNMLSVS RAHQLPPLEK DGATKAAIST TNIRPDKSET 540 LVIPRPSTTS QEQLLEKLKC SQIQWQTPPE IILDSEWCVG VGKNSKEVEV QAHRNRREKE 600 TFYPKPEDVP LNPKEPWDLE MDFDDSLTPX IPTEPPPDAD IVEDSSCSPC NGEASTDETP 660 TAISAPPPIN NGNPVPDLEL LTVLLKNPEL VFALTSGQAK SMTSEEMVAL LDVLKKNGVG 720 LAELVTGTAD CPKEKPKEPE PTSLPSPTPP SDPAARAGWR SEFPVRQSTP VLQPHFPGSR 780 VATLPTAAPH NPSPAAIPPV IVKTQAPGLG LPPHTPITTI SSMSQPTVTI NATSQHHPSL 840 NFLPKGPPAP SAHQIPTSMY PLQHSSVPDS ILPTKQYPIT NVPSAPPSVP RQESFNHNPS 900 PMTTYPTLPR PQPPTFSSRI PTWPSGAAAS AASIGRPNPT PDPWIGRSNA MSEASVPNQR 960 FLANGINYNA HTKGPLFSPV MPPGDRYEIV DGSQVETWSP EGSPVRLGGR NYSGTVRDHG 1020 RHHRPEWPRR WDPGNRDRHR SGSKQRWRDH DRDRKR

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence Send to blast

MALVPGVSEG AIVELDVGKS VESLAALLDS QRELFHSQID HFQKLVVAQC KLTGVNPLSQ  60
EMAAGALSIK IGKKPRDLLN PKAVTYMQSV FSVKDTIGKK ETREISALCG ITVTQVREFF  120
AAQRSRVRKL VHVSQEKAMR VEASRTSSNG CSSSSVQSIS AETTVIREQI PVPESAMVIN  180
SLRDGQQDTL ISTELKNTEE GPSCSALEET YPGIDSNDKK FLDNIFNLMR KEETFSGQVK  240
LVEWILQIHN STVLIWFLTK GGLTILATWL SQAAHEEQTT VLLVIFKVLC HLPLHKALPV  300
QMSAILQTVN RLRFYRTSDI SGRAKTLLSR WSKLFVRTQA LKKPLFSSSK DSQKEIIRKQ  360
RISEILSDES WHFKIDIPED ILALNADLEN NRKSESKQPL KLLPSSTDVL SKKHGRSVSL  420
SKIKERRKVL LVEQPDCKTS GRSVQVARAV PSNHSRPMSA DDIQKAKMRA MFMQNKYGKA  480
DMSNSENKPQ KTEDNHVPSP SQTSNMLSVS RAHQLPPLEK DGATKAAIST TNIRPDKSET  540
LVIPRPSTTS QEQLLEKLKC SQIQWQTPPE IILDSEWCVG VGKNSKEVEV QAHRNRREKE  600
TFYPKPEDVP LNPKEPWDLE MDFDDSLTPX IPTEPPPDAD IVEDSSCSPC NGEASTDETP  660
TAISAPPPIN NGNPVPDLEL LTVLLKNPEL VFALTSGQAK SMTSEEMVAL LDVLKKNGVG  720
LAELVTGTAD CPKEKPKEPE PTSLPSPTPP SDPAARAGWR SEFPVRQSTP VLQPHFPGSR  780
VATLPTAAPH NPSPAAIPPV IVKTQAPGLG LPPHTPITTI SSMSQPTVTI NATSQHHPSL  840
NFLPKGPPAP SAHQIPTSMY PLQHSSVPDS ILPTKQYPIT NVPSAPPSVP RQESFNHNPS  900
PMTTYPTLPR PQPPTFSSRI PTWPSGAAAS AASIGRPNPT PDPWIGRSNA MSEASVPNQR  960
FLANGINYNA HTKGPLFSPV MPPGDRYEIV DGSQVETWSP EGSPVRLGGR NYSGTVRDHG  1020
RHHRPEWPRR WDPGNRDRHR SGSKQRWRDH DRDRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	358	KKPLFSSSKDSQKEIIRK

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010938434.1	0.0	LOW QUALITY PROTEIN: homeobox protein LUMINIDEPENDENS-like
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2H3XXB4	0.0	A0A2H3XXB4_PHODC; homeobox protein LUMINIDEPENDENS-like
STRING	XP_008789939.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]