PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010938309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 366aa MW: 40050.9 Da PI: 4.9551 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl XP_010938309.1 14 KGRWTAEEDEILMKYITANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+e+++++++ G++ W++Ia +++ gRt++++k++w+++l XP_010938309.1 67 RGNISKEEEEIIIKLHAAVGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.003 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.5E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.39E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.478 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.24E-6 | 87 | 112 | No hit | No description |
Pfam | PF06640 | 1.5E-4 | 177 | 247 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTAE EDEILMKYIT ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI SKEEEEIIIK LHAAVGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRIYSFR 120 TAGGDVEAVP VDASKLATGG KQRRGRVSRS AMKTNTMNGI ARREKNEKGV GLPGPSAETP 180 SDEGHSMVLD PDQHQASCVT FEGLKEGALG PMEEMVSGLL SPGPIESSGL WGANTEMEAM 240 QLGATEESSV GWGSHEVIEN GVMSSREERE GRALVLNGNG DGGNMGLEEG IGSGIVNKGE 300 EEVGSTQLDK FLDWDLGGIE AKLWDEVGEM WPWQWDSVNR ELGLQRMEDY GHQGGSLDGW 360 ILSDVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 3e-22 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938309.1 | 0.0 | myb-related protein P | ||||
Swissprot | P27898 | 2e-78 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A2H3XNH4 | 0.0 | A0A2H3XNH4_PHODC; myb-related protein P-like | ||||
STRING | XP_008786362.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 8e-69 | myb domain protein 111 |