PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938309.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 366aa    MW: 40050.9 Da    PI: 4.9551
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938309.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_010938309.1 14 KGRWTAEEDEILMKYITANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding51.62.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+e+++++++  G++ W++Ia +++ gRt++++k++w+++l
   XP_010938309.1  67 RGNISKEEEEIIIKLHAAVGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.003961IPR017930Myb domain
SuperFamilySSF466896.5E-2811108IPR009057Homeodomain-like
SMARTSM007176.2E-111363IPR001005SANT/Myb domain
PfamPF002498.5E-141461IPR001005SANT/Myb domain
CDDcd001674.39E-81661No hitNo description
PROSITE profilePS5129425.47862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2565116IPR009057Homeodomain-like
SMARTSM007171.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.0E-1467112IPR001005SANT/Myb domain
CDDcd001672.24E-687112No hitNo description
PfamPF066401.5E-4177247IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILMKYIT ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SKEEEEIIIK LHAAVGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRIYSFR  120
TAGGDVEAVP VDASKLATGG KQRRGRVSRS AMKTNTMNGI ARREKNEKGV GLPGPSAETP  180
SDEGHSMVLD PDQHQASCVT FEGLKEGALG PMEEMVSGLL SPGPIESSGL WGANTEMEAM  240
QLGATEESSV GWGSHEVIEN GVMSSREERE GRALVLNGNG DGGNMGLEEG IGSGIVNKGE  300
EEVGSTQLDK FLDWDLGGIE AKLWDEVGEM WPWQWDSVNR ELGLQRMEDY GHQGGSLDGW  360
ILSDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22121165108B-MYB
1h8a_C3e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938309.10.0myb-related protein P
SwissprotP278982e-78MYBP_MAIZE; Myb-related protein P
TrEMBLA0A2H3XNH40.0A0A2H3XNH4_PHODC; myb-related protein P-like
STRINGXP_008786362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.18e-69myb domain protein 111
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]