PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938260.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 316aa    MW: 34829.8 Da    PI: 4.8114
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938260.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.3e-102502822355
                     SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +yp++ee+++LA+ +gL+ +q+ +WF N+R ++
  XP_010938260.1 250 PYPTEEEKAKLAEMTGLDPKQINNWFINQRKRH 282
                     8*****************************885 PP
2ELK35.12.8e-12202223122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyL++L++EF+
  XP_010938260.1 202 ELKEMLLKKYSGYLSNLRKEFL 223
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-205599IPR005540KNOX1
PfamPF037902.3E-205796IPR005540KNOX1
SMARTSM012563.0E-25102153IPR005541KNOX2
PfamPF037916.6E-24105152IPR005541KNOX2
PfamPF037891.0E-9202223IPR005539ELK domain
SMARTSM011881.9E-6202223IPR005539ELK domain
PROSITE profilePS5121311.261202222IPR005539ELK domain
PROSITE profilePS5007113.054222285IPR001356Homeobox domain
SuperFamilySSF466891.75E-20224294IPR009057Homeodomain-like
SMARTSM003898.0E-15224289IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-27227288IPR009057Homeodomain-like
CDDcd000869.29E-14234286No hitNo description
PfamPF059204.8E-17242281IPR008422Homeobox KN domain
PROSITE patternPS000270260283IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEDLYSIHPG ISGSGEIAAV GSTSSYPYFE ADRSHSGGAA EASDISGGGG SDLTDLIKAQ  60
IASHPRYPSL VSAYIECRKV GAPPEMASLL EEIGRRRYTS AGCGEIGADP ELDEFMESYC  120
RVLQRYKEEL SKPFDEAASF LNSIEVQLSN LCKGCTTSSS TTTATGNSPS DEVVGSSEEE  180
LSCGDVDASE SQESGSRLAD HELKEMLLKK YSGYLSNLRK EFLKKRKKGK LPKDARLTLL  240
DWWQTHYRWP YPTEEEKAKL AEMTGLDPKQ INNWFINQRK RHWKPSEDMQ FALMEGVGGG  300
GSNETMLYFD RGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217226LRKEFLKKRK
2223227KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911783.20.0homeobox protein knotted-1-like 1
RefseqXP_010938260.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP291e-127KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLD6PAL40.0D6PAL4_COCNU; KNOTTED-like homebox protein 2
STRINGXP_008781110.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.18e-80KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]