PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938192.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 292aa    MW: 32597.5 Da    PI: 6.517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938192.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-163178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l ++++ +G g+W+  ar+ g++Rt+k+c++rw++yl
   XP_010938192.1 31 RGPWTVDEDLVLMNYIAAHGEGRWNCLARCAGLKRTGKSCRLRWLNYL 78
                     89********************************************97 PP
2Myb_DNA-binding52.21.4e-1684127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_010938192.1  84 RGNITPEEQLLILELHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 127
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5992678IPR017930Myb domain
SuperFamilySSF466891.98E-3028125IPR009057Homeodomain-like
SMARTSM007179.7E-123080IPR001005SANT/Myb domain
PfamPF002498.0E-143178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-223285IPR009057Homeodomain-like
CDDcd001673.98E-93378No hitNo description
PROSITE profilePS5129423.74979133IPR017930Myb domain
SMARTSM007171.0E-1483131IPR001005SANT/Myb domain
PfamPF002492.2E-1584127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2386132IPR009057Homeodomain-like
CDDcd001672.11E-1188127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEMGRGLGVG VHGRTWSSAN PPTEEDMDLR RGPWTVDEDL VLMNYIAAHG EGRWNCLARC  60
AGLKRTGKSC RLRWLNYLRP DVRRGNITPE EQLLILELHS RWGNRWSKIA QQLPGRTDNE  120
IKNYWRTRVQ KHAKQLQCDV NSKQFKDVMR YLWMPRLVER IRAASGSSPA AIYQNASVPM  180
AGSEQPAEPG SEAGQVKLSP ETSSAAGSSL DSVGMQFSSP RISDCFSECY GGMQGGENRN  240
GDGIPDVQIG GWWPESLLSP GGNSNQGLPD FEQGAWGESL WSVEDTWLQQ QF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24281314106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938192.10.0transcription factor JAMYB
TrEMBLA0A2H3Y4W60.0A0A2H3Y4W6_PHODC; transcription factor MYB2-like
STRINGXP_008793362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-85myb domain protein 78