PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010938177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 152aa MW: 16640.9 Da PI: 8.2211 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.5 | 2.7e-09 | 64 | 85 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCkyGd Ck+ H++ XP_010938177.1 64 CHHFVRTGTCKYGDACKYFHPK 85 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 1.6E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 5.42E-16 | 4 | 45 | No hit | No description |
Pfam | PF06220 | 5.0E-12 | 5 | 37 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 14.314 | 58 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-4 | 60 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-7 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-7 | 63 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-7 | 63 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MPLGKYYCDY CDKQFQDTPS ARKRHLQGIQ HQRARALWYD SLKAEPHGGG PLLQPDGSLA 60 KGVCHHFVRT GTCKYGDACK YFHPKQDVAS PTPAVSGLNF VETVQSPNFL GNQILSGGMV 120 LDHTGVSWGN IPPSLRPPPE GGYPPLPLVD WG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938177.1 | 1e-110 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
Swissprot | Q0JP11 | 1e-55 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A2H3Y4R7 | 4e-99 | A0A2H3Y4R7_PHODC; zinc finger CCCH domain-containing protein 3 isoform X2 | ||||
STRING | XP_008793300.1 | 4e-98 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12617 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 2e-28 | C3H family protein |
Publications ? help Back to Top | |||
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