PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010938136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 36854.2 Da PI: 8.8591 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.8e-17 | 106 | 151 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+++ gR++k+c++rw++ XP_010938136.1 106 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 151 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3.1e-18 | 158 | 201 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ XP_010938136.1 158 RRAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 201 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.679 | 101 | 152 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 105 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-16 | 106 | 151 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.12E-28 | 106 | 199 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 107 | 159 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.42E-13 | 109 | 150 | No hit | No description |
PROSITE profile | PS51294 | 27.449 | 153 | 207 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 157 | 205 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 158 | 200 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 160 | 206 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-7 | 169 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MRPPMPTPPE EQSVSKDMAP QHLKTTAEMG FFHPPPPPPP PFHGGLGSPS GGMECRSSGM 60 GFSMEKEQNK DCGFIGGQVY HGDEKEQSEQ GEGGNHENGQ TKLCARGHWR PAEDAKLKEL 120 VSQYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSEEEEERLL AAHRLYGNKW 180 ALIARLFPGR TDNAVKNHWH VIMARKHREQ SSSYRRRKSS TSSPNPPSSQ ALPNRMEVNT 240 SNIACSGSDE KLVAGRNGCY EKFGDHGSRF PYVMMVPCSD QSGFSNSNSK ALATESVANH 300 RSRAWLHGET DHKREKISLP FIDFLGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-32 | 104 | 206 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938136.1 | 0.0 | transcription factor MYB105 isoform X3 | ||||
TrEMBL | A0A2H3Y4J9 | 1e-156 | A0A2H3Y4J9_PHODC; transcription factor CSA-like | ||||
STRING | XP_008793340.1 | 1e-157 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 9e-64 | myb domain protein 105 |