PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938136.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 330aa    MW: 36854.2 Da    PI: 8.8591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938136.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-17106151147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010938136.1 106 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 151
                      899*****************************.***********996 PP

2Myb_DNA-binding57.53.1e-18158201146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
   XP_010938136.1 158 RRAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 201
                      678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.679101152IPR017930Myb domain
SMARTSM007171.9E-14105154IPR001005SANT/Myb domain
PfamPF002495.7E-16106151IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-28106199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26107159IPR009057Homeodomain-like
CDDcd001674.42E-13109150No hitNo description
PROSITE profilePS5129427.449153207IPR017930Myb domain
SMARTSM007171.1E-15157205IPR001005SANT/Myb domain
PfamPF002492.3E-15158200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-20160206IPR009057Homeodomain-like
CDDcd001671.18E-7169200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MRPPMPTPPE EQSVSKDMAP QHLKTTAEMG FFHPPPPPPP PFHGGLGSPS GGMECRSSGM  60
GFSMEKEQNK DCGFIGGQVY HGDEKEQSEQ GEGGNHENGQ TKLCARGHWR PAEDAKLKEL  120
VSQYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSEEEEERLL AAHRLYGNKW  180
ALIARLFPGR TDNAVKNHWH VIMARKHREQ SSSYRRRKSS TSSPNPPSSQ ALPNRMEVNT  240
SNIACSGSDE KLVAGRNGCY EKFGDHGSRF PYVMMVPCSD QSGFSNSNSK ALATESVANH  300
RSRAWLHGET DHKREKISLP FIDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321042065107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938136.10.0transcription factor MYB105 isoform X3
TrEMBLA0A2H3Y4J91e-156A0A2H3Y4J9_PHODC; transcription factor CSA-like
STRINGXP_008793340.11e-157(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-64myb domain protein 105