PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010938133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 362aa MW: 40316 Da PI: 8.57 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9e-17 | 89 | 134 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+++ gR++k+c++rw++ XP_010938133.1 89 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 134 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.5e-18 | 141 | 184 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ XP_010938133.1 141 RRAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 184 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.679 | 84 | 135 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 88 | 137 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.87E-28 | 89 | 182 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-16 | 89 | 134 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 90 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.20E-13 | 92 | 133 | No hit | No description |
PROSITE profile | PS51294 | 27.449 | 136 | 190 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 140 | 188 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 141 | 183 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 143 | 189 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.58E-8 | 152 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence Send to blast |
MAPQHLKTTA EMGFFHPPPP PPPPFHGGLG SPSGGMECRS SGMGFSMEKE QNKDCGFIGG 60 QVYHGDEKEQ SEQGEGGNHE NGQTKLCARG HWRPAEDAKL KELVSQYGPQ NWNLIAEKLE 120 GRSGKSCRLR WFNQLDPRIN RRAFSEEEEE RLLAAHRLYG NKWALIARLF PGRTDNAVKN 180 HWHVIMARKH REQSSSYRRR KSSTSSPNPP SSQALPNRME VNTSNIACSG ESTITSTRDE 240 SASTCTDLSL NSFTSGTIPN LFSRYSPPQK PQPFEFLMGS DEKLVAGRNG CYEKFGDHGS 300 RFPYVMMVPC SDQSGFSNSN SKALATESVA NHRSRAWLHG ETDHKREKIS LPFIDFLGVG 360 AT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-33 | 89 | 189 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938132.1 | 0.0 | transcription factor CSA isoform X1 | ||||
Refseq | XP_010938133.1 | 0.0 | transcription factor CSA isoform X2 | ||||
Refseq | XP_010938134.1 | 0.0 | transcription factor CSA isoform X2 | ||||
Swissprot | Q5NBM8 | 2e-77 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2H3Y4J9 | 0.0 | A0A2H3Y4J9_PHODC; transcription factor CSA-like | ||||
STRING | XP_008793340.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-63 | myb domain protein 105 |