PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938132.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 379aa    MW: 42224.1 Da    PI: 8.4048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938132.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-17106151147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010938132.1 106 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 151
                      899*****************************.***********996 PP
2Myb_DNA-binding57.23.8e-18158201146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
   XP_010938132.1 158 RRAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 201
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.679101152IPR017930Myb domain
SMARTSM007171.9E-14105154IPR001005SANT/Myb domain
PfamPF002497.0E-16106151IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-28106199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-26107159IPR009057Homeodomain-like
CDDcd001672.52E-13109150No hitNo description
PROSITE profilePS5129427.449153207IPR017930Myb domain
SMARTSM007171.1E-15157205IPR001005SANT/Myb domain
PfamPF002492.8E-15158200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20160206IPR009057Homeodomain-like
CDDcd001677.02E-8169200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MRPPMPTPPE EQSVSKDMAP QHLKTTAEMG FFHPPPPPPP PFHGGLGSPS GGMECRSSGM  60
GFSMEKEQNK DCGFIGGQVY HGDEKEQSEQ GEGGNHENGQ TKLCARGHWR PAEDAKLKEL  120
VSQYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSEEEEERLL AAHRLYGNKW  180
ALIARLFPGR TDNAVKNHWH VIMARKHREQ SSSYRRRKSS TSSPNPPSSQ ALPNRMEVNT  240
SNIACSGEST ITSTRDESAS TCTDLSLNSF TSGTIPNLFS RYSPPQKPQP FEFLMGSDEK  300
LVAGRNGCYE KFGDHGSRFP YVMMVPCSDQ SGFSNSNSKA LATESVANHR SRAWLHGETD  360
HKREKISLPF IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-321062067107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938132.10.0transcription factor CSA isoform X1
SwissprotQ5NBM83e-77CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A2H3Y4J90.0A0A2H3Y4J9_PHODC; transcription factor CSA-like
STRINGXP_008793340.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-63myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]