PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010938020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | B3 | ||||||||
Protein Properties | Length: 854aa MW: 94062.2 Da PI: 7.4328 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60 | 4.2e-19 | 317 | 416 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_010938020.1 317 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLTVQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGK 409 99**************************555566778***************9989999999***9.********************987.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_010938020.1 410 LVMGFRK 416 7777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-31 | 309 | 424 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.41E-21 | 314 | 417 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.23E-24 | 315 | 416 | No hit | No description |
SMART | SM01019 | 4.2E-22 | 317 | 417 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-16 | 317 | 416 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.364 | 317 | 418 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 15.431 | 538 | 588 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.3E-13 | 543 | 585 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 854 aa Download sequence Send to blast |
MTTKRCMNVA CGATTPEGEW KKGWRLKSGG FANLCNKCGM AYEQLIFCDM FHQNESGWRE 60 CLFCGKCLHC GCIASKLSFD LLDNGGVQCI SCMKNSELSF VSSEVVQKIL PQHNQRLFSL 120 STIKVKDEKV NNVDRTIVGS AGELPTVSAN GRMGVSAIGK GKVAMWLGKN IDSNQQRMVD 180 IEQTKNENGS FQHIKWNRLA PDAAEVGRLA LGTSNAERPL VMLPPPNALT EGGDENKASS 240 AFQQIQRIHQ NLPQLPKLGS GATTDASKDG VSHMRVARPP AEGRGRNQLL PRYWPRITDE 300 ELQQISGDSN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLTVQDAK 360 GKEWHFQFRF WPNNNSRMYV LEGVTPCIQS LQLQAGDTVT FSRIDPEGKL VMGFRKATNT 420 SPLHISAIAN GALGNETFFH GVNENLPTTD KHGGRPNEGL QLLLIQKRSR NIGAKFRRMH 480 MDTEDALELT LTWEEAQDLL RPAPNARPSV VMIDDHEIEE YDEPPVLGKK TIYTARLTGE 540 RDQWIQCDDC SKWRRLPADV LLPSVWTCAD NMLDPKRSSC SAPEELSQKD LQSLLQQYAD 600 HKRQQKNATC KRNFAELDAS TGLDALANAA ALGDDCNQTT SSVATTTKHP RHRPGCTCIV 660 CIQPPSGKGP KHSPACTCNV CLTVKRRFKT LMLRKKRRQS EREEAEAQKR NAWGNKEELE 720 GSSSSRNVRH PDAHQESELV HQTVIEKLDT SKRQIDLNCH PGRDEVPQAG PPRQSMMSLL 780 QEANLPLETY LKQSGLASLV GEQGSSSLPT VPQGPGESEG RTADESYFAS VVQEGDGGAE 840 EGHGGPDKAR SDSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-67 | 295 | 424 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 684 | 695 | KRRFKTLMLRKK |
2 | 684 | 696 | KRRFKTLMLRKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938020.1 | 0.0 | B3 domain-containing protein Os07g0679700 isoform X3 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A3Q0IF82 | 0.0 | A0A3Q0IF82_PHODC; B3 domain-containing protein Os07g0679700 | ||||
STRING | XP_008808301.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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