PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938012.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 336aa MW: 35679 Da PI: 7.1552

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938012.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.7e-10	192	238	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l XP_010938012.1 192 KRAKRILANRHSAARSKERKARYISELERKVQALQTEATTLSAQLTL 238 9****************************************988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-14	188	252	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.507	190	253	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-9	192	246	No hit	No description
SuperFamily	SSF57959	2.33E-10	192	243	No hit	No description
Pfam	PF00170	6.6E-9	192	238	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.91E-22	193	242	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MLPKSQDPSH LPNPNPSTNL NLSSTFPPNA PAVAAGAVAM FQSAGPAASP RGVHHRRARS 60 ELAFRVPDDL DLSSGDPLEG GSFDIGLEDD LFCAFMDIEK IGCRLEGSGS GSEGGVCRDR 120 AAESSEGGED RKIGNAAGAV AVRPKHRHSN SIDGSSMSSG TTRGEGVFGE VVEAKKAMTA 180 EELAELAAID PKRAKRILAN RHSAARSKER KARYISELER KVQALQTEAT TLSAQLTLFQ 240 RDTTGLSAEN AELKLRLQAM EQQAQLRDAL NEALKQEVQR LKIATGEISN PGMWRCDGGQ 300 CFSKVGCSFI ASSGVGTAAV MFASSRQHLQ AGFFPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010938010.1	0.0	transcription factor RF2b isoform X1
Swissprot	Q6S4P4	3e-94	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2H3Z5B9	1e-166	A0A2H3Z5B9_PHODC; transcription factor RF2b-like
STRING	XP_008782655.1	1e-151	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-65	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]