PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937987.1 | ||||||||
Common Name | AGL2-5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26759.1 Da PI: 7.0991 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.2 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+ +e++s XP_010937987.1 9 KRIENKINRQVTFAKRRNGLLKKANELSVLCDAEVALIIFSSSGRRFEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 84.9 | 1.7e-28 | 79 | 161 | 5 | 87 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 + ++ ++++++ +qe+akLk+++e Lqr++R+llGedL++Ls +eL+qLe+q+ekslk+i s K+++l e +el++k +e+ XP_010937987.1 79 EVVAPPSETQQNTYQEYAKLKARVEFLQRSHRNLLGEDLDPLSTNELEQLENQVEKSLKQISSAKEQVLQEVNRELKRKLQEA 161 5555667889*********************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.917 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-32 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.20E-42 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.5E-22 | 86 | 160 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.463 | 88 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KANELSVLCD AEVALIIFSS SGRRFEFCSC 60 SSVLKTIERY QTYNYAASEV VAPPSETQQN TYQEYAKLKA RVEFLQRSHR NLLGEDLDPL 120 STNELEQLEN QVEKSLKQIS SAKEQVLQEV NRELKRKLQE AIPYNPLQWS WINGGGNGAG 180 GASDGPCNHE SALSEEFFQP LACHPLQVGY HAMHIDQSNK GDMTHNYNSY FPEWM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-19 | 1 | 91 | 1 | 82 | MEF2 CHIMERA |
6byy_B | 3e-19 | 1 | 91 | 1 | 82 | MEF2 CHIMERA |
6byy_C | 3e-19 | 1 | 91 | 1 | 82 | MEF2 CHIMERA |
6byy_D | 3e-19 | 1 | 91 | 1 | 82 | MEF2 CHIMERA |
6bz1_A | 3e-19 | 1 | 91 | 1 | 82 | MEF2 CHIMERA |
6bz1_B | 3e-19 | 1 | 91 | 1 | 82 | MEF2 CHIMERA |
6bz1_C | 3e-19 | 1 | 91 | 1 | 82 | MEF2 CHIMERA |
6bz1_D | 3e-19 | 1 | 91 | 1 | 82 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937987.1 | 1e-177 | truncated transcription factor CAULIFLOWER A-like isoform X4 | ||||
Swissprot | Q8LLR2 | 2e-86 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | Q5K6A1 | 1e-163 | Q5K6A1_ELAGV; MADS box transcription factor | ||||
STRING | XP_008811808.1 | 1e-126 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 8e-72 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105057174 |
Publications ? help Back to Top | |||
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