PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010937978.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 214aa MW: 23130.3 Da PI: 8.4633

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937978.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.9	5.5e-41	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++C++ pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ ela XP_010937978.1 42 PCAACKLLRRRCTQECPFFPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAVNSLVYEANVRLRDPVYGCMGAISALQQQVQALERELA 136 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++e XP_010937978.1 137 GVRSE 141 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.322	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-41	42	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSTERERLDE VGKKIKREAD VPDRKAFGHL PGPVGTLNTI TPCAACKLLR RRCTQECPFF 60 PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAVN SLVYEANVRL RDPVYGCMGA 120 ISALQQQVQA LERELAGVRS EILKYKYRST TSGAVLPTSH AAALLASSGE VSVAAPPPIT 180 APTPPASSSS SMYTAASSST DYSSITNENV PYFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-45	42	145	11	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-45	42	145	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937978.1	1e-157	LOB domain-containing protein 15
Swissprot	Q8L5T5	6e-81	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	M0SWH5	1e-117	M0SWH5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P07460_001	1e-118	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-81	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]