PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937970.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28515.2 Da    PI: 7.5337
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937970.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.2e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+ +e++s
  XP_010937970.1  9 KRIENKINRQVTFAKRRNGLLKKANELSVLCDAEVALIIFSSSGRRFEFCS 59
                    79***********************************************96 PP
2K-box100.22.8e-33791745100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++  ++++++ +qe+akLk+++e Lqr++R+llGedL++Ls +eL+qLe+q+ekslk+i s K++l+l+q+ +l++ke+ lqe n++L++kl+
  XP_010937970.1  79 EVVAPPSETQQNTYQEYAKLKARVEFLQRSHRNLLGEDLDPLSTNELEQLENQVEKSLKQISSAKTHLMLDQLYDLKRKEQVLQEVNRELKRKLQ 173
                     5555667889***********************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_010937970.1 174 E 174
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-32278IPR002100Transcription factor, MADS-box
CDDcd002651.75E-42276No hitNo description
PRINTSPR004041.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2786172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.6988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KANELSVLCD AEVALIIFSS SGRRFEFCSC  60
SSVLKTIERY QTYNYAASEV VAPPSETQQN TYQEYAKLKA RVEFLQRSHR NLLGEDLDPL  120
STNELEQLEN QVEKSLKQIS SAKTHLMLDQ LYDLKRKEQV LQEVNRELKR KLQEAIPYNP  180
LQWSWINGGG NGAGGASDGP CNHESALSEE FFQPLACHPL QVGYHAMHID QSNKGDMTHN  240
YNSYFPEWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-24751721101Developmental protein SEPALLATA 3
4ox0_B6e-24751721101Developmental protein SEPALLATA 3
4ox0_C6e-24751721101Developmental protein SEPALLATA 3
4ox0_D6e-24751721101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937970.10.0truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ8LLR26e-97MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLQ5K6A11e-159Q5K6A1_ELAGV; MADS box transcription factor
STRINGXP_008811808.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]