PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937924.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 193aa    MW: 21229.9 Da    PI: 10.7126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937924.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000190112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k+F++   L  H+++H
  XP_010937924.1  90 HECSLCPKRFRTGQALGGHMKSH 112
                     78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-477112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.85E-688116No hitNo description
PfamPF139122.1E-1289114IPR007087Zinc finger, C2H2
PROSITE profilePS501579.45290112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTQTDNPSPP LITWSLTGKR GRRRPQPRRT HHEPESQERD IARFLLALSS PSPASEHVAG  60
EAVLDGTGSG SDGSGRRKRR RKVTTRVRVH ECSLCPKRFR TGQALGGHMK SHWERDLHGR  120
VVKKKTRKLS SLLRLGLGLG FGLELDAPSP SPPNPNSPGF SLEGRERDEE YGGESLAEDY  180
TSSSPPAPLL LPC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581RRKRRRK
27680RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789183.17e-58zinc finger protein AZF3-like
TrEMBLA0A2H3XVK42e-56A0A2H3XVK4_PHODC; zinc finger protein AZF3-like
STRINGXP_008789183.13e-57(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-07C2H2-like zinc finger protein