PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937896.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 283aa    MW: 30293.1 Da    PI: 8.0221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937896.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-181863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_010937896.1 18 KGSWSPEEDAQLTRLVERHGPRNWTLISSGIP-GRSGKSCRLRWCNQ 63
                     799*****************************.***********985 PP

2Myb_DNA-binding53.74.9e-1772114347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed  +v a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_010937896.1  72 PFTPAEDAVIVAAHAKYGNK-WATIARLLP-GRTDNAIKNHWNST 114
                      89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5681364IPR017930Myb domain
SuperFamilySSF466892.62E-3016111IPR009057Homeodomain-like
SMARTSM007171.7E-161766IPR001005SANT/Myb domain
PfamPF002493.4E-181863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-241971IPR009057Homeodomain-like
CDDcd001679.56E-152062No hitNo description
PROSITE profilePS5129425.09165119IPR017930Myb domain
SMARTSM007172.5E-1469117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2272118IPR009057Homeodomain-like
CDDcd001672.80E-1172115No hitNo description
PfamPF002498.7E-1472114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
WRVGERGEGR VDGEQRIKGS WSPEEDAQLT RLVERHGPRN WTLISSGIPG RSGKSCRLRW  60
CNQLSPAVHH RPFTPAEDAV IVAAHAKYGN KWATIARLLP GRTDNAIKNH WNSTLHRRRR  120
AAEVAAATIA HATPAAAPAS VPLPLAADST DPDESDSESA GKRPCRRDEI RGSEEATVVV  180
AALPAHPPPP APPPSPPMAP IAADPVTSLT LSPPGEGGAV GGGGAGERRE TRLDAEMREM  240
CLVSIMREMI AEEVKSYINR LRSEGGGAIP IIITSESASN RQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-36171183104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937896.20.0transcription factor MYB77
TrEMBLA0A2H3XV881e-128A0A2H3XV88_PHODC; transcription factor MYB77-like
STRINGXP_008789179.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.17e-53myb domain protein 77