PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937896.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 30293.1 Da PI: 8.0221 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.7e-18 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I++ ++ gR++k+c++rw + XP_010937896.1 18 KGSWSPEEDAQLTRLVERHGPRNWTLISSGIP-GRSGKSCRLRWCNQ 63 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.9e-17 | 72 | 114 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +v a++++G++ W+tIar ++ gRt++ +k++w++ XP_010937896.1 72 PFTPAEDAVIVAAHAKYGNK-WATIARLLP-GRTDNAIKNHWNST 114 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.568 | 13 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-30 | 16 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-18 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-24 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.56E-15 | 20 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.091 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.80E-11 | 72 | 115 | No hit | No description |
Pfam | PF00249 | 8.7E-14 | 72 | 114 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
WRVGERGEGR VDGEQRIKGS WSPEEDAQLT RLVERHGPRN WTLISSGIPG RSGKSCRLRW 60 CNQLSPAVHH RPFTPAEDAV IVAAHAKYGN KWATIARLLP GRTDNAIKNH WNSTLHRRRR 120 AAEVAAATIA HATPAAAPAS VPLPLAADST DPDESDSESA GKRPCRRDEI RGSEEATVVV 180 AALPAHPPPP APPPSPPMAP IAADPVTSLT LSPPGEGGAV GGGGAGERRE TRLDAEMREM 240 CLVSIMREMI AEEVKSYINR LRSEGGGAIP IIITSESASN RQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-36 | 17 | 118 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937896.2 | 0.0 | transcription factor MYB77 | ||||
TrEMBL | A0A2H3XV88 | 1e-128 | A0A2H3XV88_PHODC; transcription factor MYB77-like | ||||
STRING | XP_008789179.1 | 1e-129 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 7e-53 | myb domain protein 77 |