PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937839.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 1677aa    MW: 182251 Da    PI: 6.4621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937839.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-07764805346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+ E e + +  + +G++ +++I++ ++ ++t  +c+++++k
   XP_010937839.1 764 PWTQGEKEVFMEMLATFGKD-FTKISSFLN-HKTTADCIEFYYK 805
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding31.63.9e-109731012445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding    4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                       WT eE   +++a  ++G++ ++ I++++g +R+++qck ++ 
   XP_010937839.1  973 WTDEEKSMFIRALSMYGKD-FAMISQCVG-TRSREQCKIFFS 1012
                       *****************99.*********.********8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-14747810IPR009057Homeodomain-like
PROSITE profilePS5129314.371760811IPR017884SANT domain
SMARTSM007172.3E-7761809IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-5763808IPR009057Homeodomain-like
PfamPF002492.0E-5764805IPR001005SANT/Myb domain
PROSITE profilePS5129313.8659681019IPR017884SANT domain
SMARTSM007172.9E-99691017IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-69711013IPR009057Homeodomain-like
SuperFamilySSF466891.72E-119721020IPR009057Homeodomain-like
CDDcd001677.12E-89731011No hitNo description
PfamPF002492.3E-89731011IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1677 aa     Download sequence    Send to blast
MPPEPVPWDR KDFVFKDRKH ERGAGSDALG GGSSSSTTRW REPYHGPRDF PRASPRRPPP  60
GQYRQSGGYH QLYPENSGAH GCTPSRSDRF WLEDEGFRPS SGRYGGGGGR SSSGGSRESR  120
GSFRRSPYWD SSDSSRQQHH DPPVTAQRSV AVPISPASQP PLKDQNDKTG GGVDDGSGTG  180
HRFDRDHSLG SISWKPLKWS RAGSLSSTKA GRSELEETGL EVLIPTGKET PIRSPVTSPA  240
PSDEGASKKK PRLGWGQGLA KYEKQKVEGS LDASGTAAKD ALNETSPKVV GLAGCPSPAT  300
PGSVTCSSSP AGIEEKPCVK VVNGDNDTSH YRDPAEELSI KLGHMEGNPI NILTALLADL  360
WQPDDASMGD STFSRQTAMN KLLLFKEDIS RELEKTECEI DLFENELKSL DGDPENDPHQ  420
SSFTSPANTA PEPCIESSNV ASKDSNLSKG HEFTSSAVTL VENNALPTDA CDAEIKGVDL  480
DSPQTVSSRF NNSASSRKGV CDHETEQLAE CLEIVENHRF KVSEIQHSVL SDDVERPATV  540
CDNGDGSRGE AGSSSDNGNF EASLHGRTDC NLITLIMASN RDAANKASQV FHKALLTSPP  600
QLDVWGSDKL LSYRQNDFRI KEKLAIHKQL LKFKERVLTL KFRALHHLWK EDLRLLSIRK  660
HRTKSSRRFE LSSRASQGGS QKQRCSIRSR FALPGNLTLV PTTEIVEFTS KLLSDSQIKL  720
YRNNLKMPAL ILDENGRKQT KFITHNGLIE DPISFEKERA MINPWTQGEK EVFMEMLATF  780
GKDFTKISSF LNHKTTADCI EFYYKNHKSE SFREVKKRLN LNKQWQRLPT SSYLGTSGKK  840
WNREVNAASL DMLGAASVVA AHSNGNATSQ QRYSGHGAHD GLKVSCGSYG SLERVSNVET  900
PGHERETVAA GVLVGICGAL EAVSSCITSS IDPVEKMNYM AKEWPLTPEV TQNFDEDDTC  960
SDEGCGELDS ADWTDEEKSM FIRALSMYGK DFAMISQCVG TRSREQCKIF FSKARKCLGL  1020
DVIHQGTSNG GMPMSDTNGG RSDTDDACAA EMDSAICSTQ SCSKMDADVS QSVANISSEG  1080
FVHAARTPLQ AETDKSSEQD VVGGINLEED EGKVDKQASV LHDDKLGSEG DNPQSMQDVD  1140
AALRCNASVQ HEAVGCVDAE MKMEGSSPIV SPGEPVFTVC MEVESKSHID GVVEKKETGG  1200
SADVLKKEVD VSLPVPETGS RNRQLMVDLG ATNGGTICST SDSKADPNAL HLGNKVDDCP  1260
RSTVAPIYPH QMPLDLLPCL QNKSQGISLM QENSHSVPSN SVLPDPSSAR FEGPLLATPQ  1320
ATLNFEDHGN KRHKNPVARD LYPVDQPLHM MRNPSLKQVD QPMCILRGYP LQVLNQEVKK  1380
EADPLISENA VFMESHPKRN GVSQSGQFFI SEMYSDHCNG SSLSHSRPGV LFPPRNEAQP  1440
EAQLKHSSQN SCSEPEEQAH RTGDVKLFGQ IICHPSSSQK SSSSLHECNS KPSSPQVNRS  1500
STLKSSNGGK AGTLFASRPG SSGHGGLGEL PLRSYGLWDG SRKQAGFSSL PESAVMLAKY  1560
PGSLAGMSFY SGKDSVPSRN RILTDYQQTY MQHLSSDEKR LQSFCELQKR NGIETVSGFQ  1620
QQGRVPRLGS NMVGGGILGG GGGVSDPVAA LKMHYAARAK VLSGELESWR GGDIGGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-15727813994NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-15727813994NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937839.10.0uncharacterized protein LOC105057083 isoform X3
TrEMBLA0A2H3XV030.0A0A2H3XV03_PHODC; uncharacterized protein LOC103706673 isoform X3
STRINGXP_008789086.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-129MYB family protein