PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010937838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1677aa MW: 182251 Da PI: 6.4621 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.6e-07 | 764 | 805 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ E e + + + +G++ +++I++ ++ ++t +c+++++k XP_010937838.1 764 PWTQGEKEVFMEMLATFGKD-FTKISSFLN-HKTTADCIEFYYK 805 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 31.6 | 3.9e-10 | 973 | 1012 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++a ++G++ ++ I++++g +R+++qck ++ XP_010937838.1 973 WTDEEKSMFIRALSMYGKD-FAMISQCVG-TRSREQCKIFFS 1012 *****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-14 | 747 | 810 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.371 | 760 | 811 | IPR017884 | SANT domain |
SMART | SM00717 | 2.3E-7 | 761 | 809 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-5 | 763 | 808 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-5 | 764 | 805 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 13.865 | 968 | 1019 | IPR017884 | SANT domain |
SMART | SM00717 | 2.9E-9 | 969 | 1017 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-6 | 971 | 1013 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-11 | 972 | 1020 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.12E-8 | 973 | 1011 | No hit | No description |
Pfam | PF00249 | 2.3E-8 | 973 | 1011 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1677 aa Download sequence Send to blast |
MPPEPVPWDR KDFVFKDRKH ERGAGSDALG GGSSSSTTRW REPYHGPRDF PRASPRRPPP 60 GQYRQSGGYH QLYPENSGAH GCTPSRSDRF WLEDEGFRPS SGRYGGGGGR SSSGGSRESR 120 GSFRRSPYWD SSDSSRQQHH DPPVTAQRSV AVPISPASQP PLKDQNDKTG GGVDDGSGTG 180 HRFDRDHSLG SISWKPLKWS RAGSLSSTKA GRSELEETGL EVLIPTGKET PIRSPVTSPA 240 PSDEGASKKK PRLGWGQGLA KYEKQKVEGS LDASGTAAKD ALNETSPKVV GLAGCPSPAT 300 PGSVTCSSSP GIEEKPCVKV VNGDNDTSHY RDPAEELSIK LGHMEGNPIN ILTALLADLW 360 QPDDASMGDS TFSRQTAMNK LLLFKEDISR ELEKTECEID LFENELKSLD GDPENDPHQS 420 SFTSPANTAP EPCIESSNVA SKDSNLSKGH EFTSSAVTLV ENNALPTDAC DAEIKGVDLD 480 SPQTVSSRFN NSASSRKGVC DHETEQLAEC LEIVENHRFK VSEIQHSVLS DDVERPATVC 540 DNGDGSRGEA GSSSDNGNFE ASLHGRTDCN LITLIMASNR DAANKASQVF HKALLTSPPQ 600 LDVWGSDKLL SYRQNDFRIK EKLAIHKQLL KFKERVLTLK FRALHHLWKE DLRLLSIRKH 660 RTKSSRRFEL SSRASQGGSQ KQRCSIRSRF ALPAGNLTLV PTTEIVEFTS KLLSDSQIKL 720 YRNNLKMPAL ILDENGRKQT KFITHNGLIE DPISFEKERA MINPWTQGEK EVFMEMLATF 780 GKDFTKISSF LNHKTTADCI EFYYKNHKSE SFREVKKRLN LNKQWQRLPT SSYLGTSGKK 840 WNREVNAASL DMLGAASVVA AHSNGNATSQ QRYSGHGAHD GLKVSCGSYG SLERVSNVET 900 PGHERETVAA GVLVGICGAL EAVSSCITSS IDPVEKMNYM AKEWPLTPEV TQNFDEDDTC 960 SDEGCGELDS ADWTDEEKSM FIRALSMYGK DFAMISQCVG TRSREQCKIF FSKARKCLGL 1020 DVIHQGTSNG GMPMSDTNGG RSDTDDACAA EMDSAICSTQ SCSKMDADVS QSVANISSEG 1080 FVHAARTPLQ AETDKSSEQD VVGGINLEED EGKVDKQASV LHDDKLGSEG DNPQSMQDVD 1140 AALRCNASVQ HEAVGCVDAE MKMEGSSPIV SPGEPVFTVC MEVESKSHID GVVEKKETGG 1200 SADVLKKEVD VSLPVPETGS RNRQLMVDLG ATNGGTICST SDSKADPNAL HLGNKVDDCP 1260 RSTVAPIYPH QMPLDLLPCL QNKSQGISLM QENSHSVPSN SVLPDPSSAR FEGPLLATPQ 1320 ATLNFEDHGN KRHKNPVARD LYPVDQPLHM MRNPSLKQVD QPMCILRGYP LQVLNQEVKK 1380 EADPLISENA VFMESHPKRN GVSQSGQFFI SEMYSDHCNG SSLSHSRPGV LFPPRNEAQP 1440 EAQLKHSSQN SCSEPEEQAH RTGDVKLFGQ IICHPSSSQK SSSSLHECNS KPSSPQVNRS 1500 STLKSSNGGK AGTLFASRPG SSGHGGLGEL PLRSYGLWDG SRKQAGFSSL PESAVMLAKY 1560 PGSLAGMSFY SGKDSVPSRN RILTDYQQTY MQHLSSDEKR LQSFCELQKR NGIETVSGFQ 1620 QQGRVPRLGS NMVGGGILGG GGGVSDPVAA LKMHYAARAK VLSGELESWR GGDIGGR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-15 | 727 | 813 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-15 | 727 | 813 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937838.1 | 0.0 | uncharacterized protein LOC105057083 isoform X2 | ||||
TrEMBL | A0A3Q0I3N9 | 0.0 | A0A3Q0I3N9_PHODC; uncharacterized protein LOC103706673 isoform X2 | ||||
STRING | XP_008789086.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-130 | MYB family protein |