PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 1678aa MW: 182322 Da PI: 6.4621 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.6e-07 | 765 | 806 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ E e + + + +G++ +++I++ ++ ++t +c+++++k XP_010937837.1 765 PWTQGEKEVFMEMLATFGKD-FTKISSFLN-HKTTADCIEFYYK 806 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 31.6 | 4e-10 | 974 | 1013 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++a ++G++ ++ I++++g +R+++qck ++ XP_010937837.1 974 WTDEEKSMFIRALSMYGKD-FAMISQCVG-TRSREQCKIFFS 1013 *****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.18E-14 | 748 | 811 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.371 | 761 | 812 | IPR017884 | SANT domain |
SMART | SM00717 | 2.3E-7 | 762 | 810 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-5 | 764 | 809 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-5 | 765 | 806 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 13.865 | 969 | 1020 | IPR017884 | SANT domain |
SMART | SM00717 | 2.9E-9 | 970 | 1018 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-6 | 972 | 1014 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-11 | 973 | 1021 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.12E-8 | 974 | 1012 | No hit | No description |
Pfam | PF00249 | 2.3E-8 | 974 | 1012 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1678 aa Download sequence Send to blast |
MPPEPVPWDR KDFVFKDRKH ERGAGSDALG GGSSSSTTRW REPYHGPRDF PRASPRRPPP 60 GQYRQSGGYH QLYPENSGAH GCTPSRSDRF WLEDEGFRPS SGRYGGGGGR SSSGGSRESR 120 GSFRRSPYWD SSDSSRQQHH DPPVTAQRSV AVPISPASQP PLKDQNDKTG GGVDDGSGTG 180 HRFDRDHSLG SISWKPLKWS RAGSLSSTKA GRSELEETGL EVLIPTGKET PIRSPVTSPA 240 PSDEGASKKK PRLGWGQGLA KYEKQKVEGS LDASGTAAKD ALNETSPKVV GLAGCPSPAT 300 PGSVTCSSSP AGIEEKPCVK VVNGDNDTSH YRDPAEELSI KLGHMEGNPI NILTALLADL 360 WQPDDASMGD STFSRQTAMN KLLLFKEDIS RELEKTECEI DLFENELKSL DGDPENDPHQ 420 SSFTSPANTA PEPCIESSNV ASKDSNLSKG HEFTSSAVTL VENNALPTDA CDAEIKGVDL 480 DSPQTVSSRF NNSASSRKGV CDHETEQLAE CLEIVENHRF KVSEIQHSVL SDDVERPATV 540 CDNGDGSRGE AGSSSDNGNF EASLHGRTDC NLITLIMASN RDAANKASQV FHKALLTSPP 600 QLDVWGSDKL LSYRQNDFRI KEKLAIHKQL LKFKERVLTL KFRALHHLWK EDLRLLSIRK 660 HRTKSSRRFE LSSRASQGGS QKQRCSIRSR FALPAGNLTL VPTTEIVEFT SKLLSDSQIK 720 LYRNNLKMPA LILDENGRKQ TKFITHNGLI EDPISFEKER AMINPWTQGE KEVFMEMLAT 780 FGKDFTKISS FLNHKTTADC IEFYYKNHKS ESFREVKKRL NLNKQWQRLP TSSYLGTSGK 840 KWNREVNAAS LDMLGAASVV AAHSNGNATS QQRYSGHGAH DGLKVSCGSY GSLERVSNVE 900 TPGHERETVA AGVLVGICGA LEAVSSCITS SIDPVEKMNY MAKEWPLTPE VTQNFDEDDT 960 CSDEGCGELD SADWTDEEKS MFIRALSMYG KDFAMISQCV GTRSREQCKI FFSKARKCLG 1020 LDVIHQGTSN GGMPMSDTNG GRSDTDDACA AEMDSAICST QSCSKMDADV SQSVANISSE 1080 GFVHAARTPL QAETDKSSEQ DVVGGINLEE DEGKVDKQAS VLHDDKLGSE GDNPQSMQDV 1140 DAALRCNASV QHEAVGCVDA EMKMEGSSPI VSPGEPVFTV CMEVESKSHI DGVVEKKETG 1200 GSADVLKKEV DVSLPVPETG SRNRQLMVDL GATNGGTICS TSDSKADPNA LHLGNKVDDC 1260 PRSTVAPIYP HQMPLDLLPC LQNKSQGISL MQENSHSVPS NSVLPDPSSA RFEGPLLATP 1320 QATLNFEDHG NKRHKNPVAR DLYPVDQPLH MMRNPSLKQV DQPMCILRGY PLQVLNQEVK 1380 KEADPLISEN AVFMESHPKR NGVSQSGQFF ISEMYSDHCN GSSLSHSRPG VLFPPRNEAQ 1440 PEAQLKHSSQ NSCSEPEEQA HRTGDVKLFG QIICHPSSSQ KSSSSLHECN SKPSSPQVNR 1500 SSTLKSSNGG KAGTLFASRP GSSGHGGLGE LPLRSYGLWD GSRKQAGFSS LPESAVMLAK 1560 YPGSLAGMSF YSGKDSVPSR NRILTDYQQT YMQHLSSDEK RLQSFCELQK RNGIETVSGF 1620 QQQGRVPRLG SNMVGGGILG GGGGVSDPVA ALKMHYAARA KVLSGELESW RGGDIGGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-15 | 728 | 814 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-15 | 728 | 814 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937837.1 | 0.0 | uncharacterized protein LOC105057083 isoform X1 | ||||
TrEMBL | A0A2H3XUT4 | 0.0 | A0A2H3XUT4_PHODC; uncharacterized protein LOC103706673 isoform X1 | ||||
STRING | XP_008789086.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-128 | MYB family protein |