PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937707.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 242aa    MW: 27378.8 Da    PI: 6.6774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937707.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.7e-14855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv  v ++G ++W+  a+  g++Rt+k+c++rw +yl
   XP_010937707.1  8 KGPWTEQEDLQLVWFVGLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding55.51.3e-1761105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T++E+ l +++++++G++ W++Iar+++ gRt++++k++w+++
   XP_010937707.1  61 RGRMTPQEEHLVLELHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTH 105
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.252355IPR017930Myb domain
SuperFamilySSF466894.08E-286102IPR009057Homeodomain-like
SMARTSM007172.0E-12757IPR001005SANT/Myb domain
PfamPF002494.1E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-18962IPR009057Homeodomain-like
CDDcd001671.26E-81055No hitNo description
PROSITE profilePS5129425.6756110IPR017930Myb domain
SMARTSM007173.6E-1560108IPR001005SANT/Myb domain
PfamPF002494.2E-1661105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2463109IPR009057Homeodomain-like
CDDcd001678.39E-1163105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAKGDTRKGP WTEQEDLQLV WFVGLFGERR WDFLAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGRMTPQEEH LVLELHAKWG NRWSRIARRL PGRTDNEIKN YWRTHTRKKA QERKGSSPPL  120
SPSSSSSNPS SSLGDPPLEA GVGKHEVDGV VEGTSSMIGF QGNEEDVKGS YPPMDQIWSE  180
IASLELISEL SFEGYKNEAC INVSCPSVPS PVWDYCSDSL WKIDDEEFKM LAPIADNTIR  240
ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2581104105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123914.11e-180myb-related protein MYBAS1
SwissprotQ53NK65e-84MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A2H3YAW81e-136A0A2H3YAW8_PHODC; myb-related protein MYBAS1-like isoform X1
STRINGXP_008795797.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.37e-74myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]