PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010937596.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 754aa MW: 85683.3 Da PI: 7.8111

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937596.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	391.6	8.4e-120	375	746	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d++ a++lL+++++++sp+gd +qRla +f+ +L+arla+++s++y++l +++t+ ++ l+a++l+ ++P+ +sh XP_010937596.1 375 LRTLLIHCAQAVAADDHRTASELLKQIRQHSSPNGDGTQRLANCFADGLEARLAGTGSQIYHTLIAKRTT---ATDILKAYHLYLAACPFKMVSH 466 6789**********************************************************999998...89**************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + + q+Il+ +e+++rvHiiDf+i G+QWp+L+q La+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe++ +a+++e+ XP_010937596.1 467 FFCHQTILNVAEKASRVHIIDFGIYFGFQWPCLIQRLAARAQGPPTLRITGIDVPQPGfrPTERIEETGRRLADYAKSFNVPFEYQG-IASKWEN 560 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++++E+l+V++ ++ +l+de+v ++s+r++vL++++++sP+v+++ + +++++ F++rf eal +ysalfd+le+++pre+e+r XP_010937596.1 561 IRVEDLKIDRDEVLIVSCFYRFRNLVDETVIVDSPRNKVLNTIRKMSPNVFIHGVVNGSYGAPFFVTRFREALFHYSALFDMLETNVPREDEQRL 655 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er l+gre+ nv+aceg+er+er et+++W+ r +aGF ++pl+ +++k+ak +++ + + + ++e+s +l++gWk+r + ++S W+ XP_010937596.1 656 LIERDLFGREALNVIACEGSERVERPETYKQWQVRNLRAGFVQLPLNPDIMKKAKDKVKTSYHKDFVIDEDSRWLLQGWKGRIIHALSTWK 746 **********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.872	349	726	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-117	375	746	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MNRRVRELSG MMNGLTYRDF CSRQNTTNGF RLEQLQPFLY HSNHMNFPPQ MVSGTNTMNP 60 NGNPSSAHRT TPGVDSPEDC EVFSDIALNY ISKMLMEEDI DEKVNNYQEE SALQATEKPF 120 YEILGQKYPP SPVQRPLYSH RSRESTNSSY GNSNSRSNSS RVSDNSWAPD FHEYRQSQSL 180 RASLDRSSQS PLSSSNSVGN VVEAVEEPLI SSSRLPDLLI ESLPAWQFRR GVEEARKFLP 240 SDDKLKIDLE ANGFSSPQKL KNAGRAVDVK AEEEEETEHA VHGSRGRKNL HREDLDLEEG 300 RSNKQSAVYS EDTIRSEMFD MVLLCQGEKS SKKISDLREA MQNEANKNSQ NGHAKGSGGG 360 KARGKKQSKR EVVDLRTLLI HCAQAVAADD HRTASELLKQ IRQHSSPNGD GTQRLANCFA 420 DGLEARLAGT GSQIYHTLIA KRTTATDILK AYHLYLAACP FKMVSHFFCH QTILNVAEKA 480 SRVHIIDFGI YFGFQWPCLI QRLAARAQGP PTLRITGIDV PQPGFRPTER IEETGRRLAD 540 YAKSFNVPFE YQGIASKWEN IRVEDLKIDR DEVLIVSCFY RFRNLVDETV IVDSPRNKVL 600 NTIRKMSPNV FIHGVVNGSY GAPFFVTRFR EALFHYSALF DMLETNVPRE DEQRLLIERD 660 LFGREALNVI ACEGSERVER PETYKQWQVR NLRAGFVQLP LNPDIMKKAK DKVKTSYHKD 720 FVIDEDSRWL LQGWKGRIIH ALSTWKPNES YSIA

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MNRRVRELSG MMNGLTYRDF CSRQNTTNGF RLEQLQPFLY HSNHMNFPPQ MVSGTNTMNP  60
NGNPSSAHRT TPGVDSPEDC EVFSDIALNY ISKMLMEEDI DEKVNNYQEE SALQATEKPF  120
YEILGQKYPP SPVQRPLYSH RSRESTNSSY GNSNSRSNSS RVSDNSWAPD FHEYRQSQSL  180
RASLDRSSQS PLSSSNSVGN VVEAVEEPLI SSSRLPDLLI ESLPAWQFRR GVEEARKFLP  240
SDDKLKIDLE ANGFSSPQKL KNAGRAVDVK AEEEEETEHA VHGSRGRKNL HREDLDLEEG  300
RSNKQSAVYS EDTIRSEMFD MVLLCQGEKS SKKISDLREA MQNEANKNSQ NGHAKGSGGG  360
KARGKKQSKR EVVDLRTLLI HCAQAVAADD HRTASELLKQ IRQHSSPNGD GTQRLANCFA  420
DGLEARLAGT GSQIYHTLIA KRTTATDILK AYHLYLAACP FKMVSHFFCH QTILNVAEKA  480
SRVHIIDFGI YFGFQWPCLI QRLAARAQGP PTLRITGIDV PQPGFRPTER IEETGRRLAD  540
YAKSFNVPFE YQGIASKWEN IRVEDLKIDR DEVLIVSCFY RFRNLVDETV IVDSPRNKVL  600
NTIRKMSPNV FIHGVVNGSY GAPFFVTRFR EALFHYSALF DMLETNVPRE DEQRLLIERD  660
LFGREALNVI ACEGSERVER PETYKQWQVR NLRAGFVQLP LNPDIMKKAK DKVKTSYHKD  720
FVIDEDSRWL LQGWKGRIIH ALSTWKPNES YSIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-48	381	747	24	379	Protein SCARECROW
5b3h_D	4e-48	381	747	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937596.1	0.0	scarecrow-like protein 9
Refseq	XP_010937597.1	0.0	scarecrow-like protein 9
Refseq	XP_029123935.1	0.0	scarecrow-like protein 9
TrEMBL	A0A3Q0ID77	0.0	A0A3Q0ID77_PHODC; scarecrow-like protein 9
STRING	XP_008799752.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein