PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010937592.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 336aa MW: 37313.4 Da PI: 4.7281

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937592.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.5	2.4e-32	126	182	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers +dp+++++tYeg H h XP_010937592.1 126 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSMDDPETFIVTYEGLHLH 182 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.7E-31	117	183	IPR003657	WRKY domain
PROSITE profile	PS50811	27.818	120	185	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-27	120	183	IPR003657	WRKY domain
SMART	SM00774	1.2E-37	125	184	IPR003657	WRKY domain
Pfam	PF03106	3.8E-26	126	182	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSLSCYTSNP MEEVDESETN WLDSLGEELV RELLDDTIPV FVSPNVTEPE PDTRSESIIN 60 KLISRVHSSG PTIGGIESAQ SETFQSGEPD GHGSSRPIIS LPEKGLGKME SKYTLRIKTS 120 QNGPADDGYK WRKYGQKSIK NSPNPRSYYR CTNPRCNAKK QVERSMDDPE TFIVTYEGLH 180 LHYTYSHFFL SRTQDSSAAD LHLSKKPKIQ SMSMQTQVAD CPVTENTAWS SSIMEQNQLQ 240 PWISGGQSPQ GRLLEEVVQC PVREDTSQQG FLDDLMQSPQ GLLEDVVPLL VRKPSNSTTS 300 SYDPRSSSPA SSPSYSSLSW TPISSYLDVG ILSSII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	125	182	14	71	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937592.1	0.0	probable WRKY transcription factor 49
TrEMBL	A0A2H3X2G5	1e-167	A0A2H3X2G5_PHODC; probable WRKY transcription factor 49
STRING	XP_008801895.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7525	35	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	1e-46	WRKY DNA-binding protein 49