PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 311aa MW: 34153.2 Da PI: 9.453 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.7 | 1.1e-30 | 44 | 162 | 2 | 117 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg....k 89 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++ ++ ++ + + + s++ + XP_010937590.1 44 FGGKDRHSKVSTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQMPPGNFIqfpQ--ALQMSHE--ATPrlqaP 134 689*************************************************************999998886422..3333322..22223345 PP TCP 90 aaksaakskksqksaasalnlakesrak 117 +++s+ +k +q++a + + k s + XP_010937590.1 135 SCPSDVLQKTKQREAMRESGIEKGSATE 162 6666666666666666556555554433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.115 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-28 | 46 | 163 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MIKDSQQRQL SAKQGSATND KARTSMGLWS GLKDPRIVRV SRAFGGKDRH SKVSTIRGLR 60 DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQMP PGNFIQFPQA 120 LQMSHEATPR LQAPSCPSDV LQKTKQREAM RESGIEKGSA TEGDEMEHDA SIHCAQVSAN 180 DLLSRTHHSS LDLLSNAMQY GCYYQWESPN AYNVSHLGIH SSLVEGQPTS NPSSLSAGPA 240 SQLVFCPPGA MPSAFDFDPK QFSHFQVVSS ASENTPLNPT RTSLHSGNSA VRAFQSNLAS 300 KHHHAGNQNK S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-19 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-19 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937590.1 | 0.0 | transcription factor TCP17 isoform X2 | ||||
TrEMBL | A0A2H3YXJ8 | 0.0 | A0A2H3YXJ8_PHODC; transcription factor TCP5-like | ||||
STRING | XP_008805146.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-45 | plastid transcription factor 1 |