PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 359aa MW: 39289.8 Da PI: 7.7446 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.4 | 1.1e-29 | 44 | 126 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++ ++ ++ +++ + s++ XP_010937582.1 44 FGGKDRHSKVSTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQMPPGNFIqFPQALQMSHE 126 689*************************************************************8888877753333333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-28 | 46 | 205 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.115 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MIKDSQQRQL SAKQGSATND KARTSMGLWS GLKDPRIVRV SRAFGGKDRH SKVSTIRGLR 60 DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQMP PGNFIQFPQA 120 LQMSHEATPR LQAPSCPSGE DNLEYPTENG GRPLALFSSK ANQDVLGDEV VVEDLATLSK 180 SNLFNSDVLQ KTKQREAMRE SGIEKGSATE GDEMEHDASI HCAQVSANDL LSRTHHSSLD 240 LLSNAMQYGC YYQWESPNAY NVSHLGIHSS LVEGQPTSNP SSLSAGPASQ LVFCPPGAMP 300 SAFDFDPKQF SHFQVVSSAS ENTPLNPTRT SLHSGNSAVR AFQSNLASKH HHAGNQNKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-19 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-19 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937582.1 | 0.0 | transcription factor TCP5 isoform X1 | ||||
TrEMBL | A0A2H3YXJ8 | 0.0 | A0A2H3YXJ8_PHODC; transcription factor TCP5-like | ||||
STRING | XP_008805146.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-45 | plastid transcription factor 1 |