PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937498.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 355aa    MW: 38252.5 Da    PI: 6.165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937498.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20178227255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  XP_010937498.1 178 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAFAYDKAAFRLRG 227
                     59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.64E-31177237No hitNo description
SMARTSM003801.0E-36178241IPR001471AP2/ERF domain
PROSITE profilePS5103223.064178235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-32178236IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-23178236IPR016177DNA-binding domain
PfamPF008475.9E-13179227IPR001471AP2/ERF domain
PRINTSPR003676.3E-11179190IPR001471AP2/ERF domain
PRINTSPR003676.3E-11201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MATVIDLYNS HQVLSSDPFS EELMKAFEPF IRCASTSSSS PSPSSTFTPE TTPSSYSSSS  60
SSSPSPSFST PSPSLSSSSY PFSPLVPTPS PSPPPQNPIL DCSSSGFLAA GSPGPIGLNH  120
LTPVQIQQIQ AQIQLQQQQN LLAARQLSQG RAAPSFLGPR AQPMKHAGSP PPPRPAKLYR  180
GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEEAAFAYDK AAFRLRGDFA RLNFPHLRDE  240
IARAADGPLH SSVDAKLQAI CQTLANSPKQ GALQPIPDAA ADAGRRPNAA TSVLGSEDFN  300
KSESSSEGGD DCSSGSSPAS EMQHLDFTEV PWDESESFVL RKYPSWEIDW DSILA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20177235160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123870.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E43e-63RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2H3Z5041e-165A0A2H3Z504_PHODC; ethylene-responsive transcription factor ERF060-like
STRINGXP_008808175.11e-166(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-44related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]