PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010937395.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Trihelix

Protein Properties

Length: 284aa MW: 32489.3 Da PI: 5.1549

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937395.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.8	1.9e-20	30	112	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ e+ +Liea++e++ +l+rg+lk+++Weev++++ g++++ +qC++k+e+l+kry++ + + + s +pyfd+++ XP_010937395.1 30 WSHLETVHLIEAYEEKWYSLKRGQLKAHQWEEVAAAVatrcGFDGLSKTGTQCRHKIEKLRKRYRADRLRPNP------SAWPYFDRMD 112 *********************************99766666799**************986666554......57*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.2E-22	28	114	No hit	No description
SMART	SM00595	2.6E-7	37	119	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MTASGVAERH PGSPVLAAAA ARKPAPGQPW SHLETVHLIE AYEEKWYSLK RGQLKAHQWE 60 EVAAAVATRC GFDGLSKTGT QCRHKIEKLR KRYRADRLRP NPSAWPYFDR MDRMERGPLP 120 ISVRPPVPPV FADADAAAGD PSSEEEDEED DEEEEERTAS NTRSINGILR EGNWGFSRVS 180 RNPRSRKRRA FEEEEDDEEE EEQEEGVGAR GEALSKLAVV VRMFGEELVR MEKRRMEMLR 240 EVERDWMEME AKRAEMIMES QRFLVDTIAN AFSSLKKAKK SQDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937395.1	0.0	uncharacterized protein LOC105056785
TrEMBL	A0A426YZL6	2e-99	A0A426YZL6_ENSVE; Uncharacterized protein
STRING	GSMUA_Achr6P04170_001	7e-97	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-25	Trihelix family protein