PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010937354.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 405aa MW: 45580.7 Da PI: 7.2614

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937354.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.9	1.7e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++++l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ XP_010937354.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIRQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSS 107 579*************************.89***********8888999***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg ktdW+mhe+rl XP_010937354.1 108 eGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 56667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-58	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.082	14	172	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDERNDMDKG DEVMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIRQLD IYKYDPWDLP 60 KLATTGEKEW YFYCPRDRKY RNSTRPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLSDPSLP KRPLDKNIPA NDSWAICRIF KKTNSMAQRA 180 LSHSWVSPLP ETNDQDLFSV SHTAQRTQFA SENSSRTTEV GSAIQFGCNN SIQQQACTMG 240 YSPLDFTSYK PMDLIGCKPS QFLPVSGAEI PTSFMFSPAE VSMPSKCPVD VAAMLLNISP 300 TILGDVEKAS ESIGFGQPQQ FNGITVDLPL EMSSSLGSGE EEMSTKKTAN TCNVSNNQWG 360 AVKTISFPFS LPSNLSDEWK PNLEWDSPPC PSEMPKTYST YKCYN

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDERNDMDKG DEVMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIRQLD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSTRPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLSDPSLP KRPLDKNIPA NDSWAICRIF KKTNSMAQRA  180
LSHSWVSPLP ETNDQDLFSV SHTAQRTQFA SENSSRTTEV GSAIQFGCNN SIQQQACTMG  240
YSPLDFTSYK PMDLIGCKPS QFLPVSGAEI PTSFMFSPAE VSMPSKCPVD VAAMLLNISP  300
TILGDVEKAS ESIGFGQPQQ FNGITVDLPL EMSSSLGSGE EEMSTKKTAN TCNVSNNQWG  360
AVKTISFPFS LPSNLSDEWK PNLEWDSPPC PSEMPKTYST YKCYN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-53	16	175	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-53	16	175	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-53	16	175	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-53	16	175	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	8e-53	16	175	22	171	NAC domain-containing protein 19
3swm_B	8e-53	16	175	22	171	NAC domain-containing protein 19
3swm_C	8e-53	16	175	22	171	NAC domain-containing protein 19
3swm_D	8e-53	16	175	22	171	NAC domain-containing protein 19
3swp_A	8e-53	16	175	22	171	NAC domain-containing protein 19
3swp_B	8e-53	16	175	22	171	NAC domain-containing protein 19
3swp_C	8e-53	16	175	22	171	NAC domain-containing protein 19
3swp_D	8e-53	16	175	22	171	NAC domain-containing protein 19
4dul_A	7e-53	16	175	19	168	NAC domain-containing protein 19
4dul_B	7e-53	16	175	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937354.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-108	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2H3XI11	0.0	A0A2H3XI11_PHODC; protein FEZ-like
STRING	XP_008784123.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-110	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]