PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937294.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 757aa    MW: 86042.1 Da    PI: 7.5792
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937294.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.81.3e-124881132
            GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32
                    C  Cg +   Tp++Rrgp+g++tLCnaCG+ + k
  XP_010937294.1 48 CLRCGISAkaTPHMRRGPEGPRTLCNACGIAWTK 81
                    5567766666**********************98 PP
2FAR188.21.2e-27123208188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     +fYn+YA +vGFsvrks+s ks++n  + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k +++g+++vt++  +HnH+
  XP_010937294.1 123 EFYNRYAGHVGFSVRKSSSDKSSENI-TRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITSTGRYRVTEFIPDHNHQ 208
                     6*********************6666.999*************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.0E-54293IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-84484No hitNo description
Gene3DG3DSA:3.30.50.103.4E-104681IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-64790No hitNo description
PfamPF003203.0E-105081IPR000679Zinc finger, GATA-type
PfamPF031011.1E-24123208IPR004330FAR1 DNA binding domain
PfamPF105512.7E-31332426IPR018289MULE transposase domain
PROSITE profilePS509669.953600647IPR007527Zinc finger, SWIM-type
PfamPF044348.0E-5600644IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-4622649IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MHMPEPVDDV RGGGSGSGGD YQMQYEQEPE LEVQPSNGDD GLEGPLRCLR CGISAKATPH  60
MRRGPEGPRT LCNACGIAWT KSLYKQGKMR KVIDSVAPLD DAAIAKLVPE IDMEFESEEK  120
AYEFYNRYAG HVGFSVRKSS SDKSSENITR SRTFVCSREG FRKDKKGAKE VKRPRPETRI  180
GCPARMTIKI TSTGRYRVTE FIPDHNHQPA PPSTTHMLRS QRITTELQAV EADMSDDSGT  240
TPRSTNEPVG RQVGGPRHVN FLPADYKNHL RSKRMKAMQT GDAGAVLKYL QSMQLDNPSF  300
FYAIQVDDED KLTNILWADS KSILDFNYFG DVVCLDTTYK INGYGRPLTP FLGVNHHKQT  360
VIFGAALIYD ESIESFKWLF DTFKIAMRGK QPKTILTDQS IAINSAVAAA WPGTSHRLCM  420
WHVYQNAVKH LNHVFQGSKT FGKDFSRCVY EYEEEEEFLL AWRAMLEKYD LRNNEWLGKL  480
FEERDKWALP YGRQIFCADM KSTLQNESLS SVLKKYLSPQ LDLLSFFKHY ERVVDEHRYA  540
ELQADFHASQ SFPRIPPSKM LRQAANIYTP VVFEIFRREF EMFMDCMLYS CGEVDTTSEY  600
RVAVTEKPKE HFVRFDSSDC SAICSCKKFE FMGIQCCHVL KVLDFRNIKE LPQKYYLKRW  660
RKAAKSGNEG DNRAVANDGD HRSPTSSSLN VPVSSYAQQQ GFHGMSQFSQ DSPVSDLQPN  720
SFHGSTQLAQ GYTAPDMHSQ PFLGSSHLNH QGNDPGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937294.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_019710160.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2H3XF410.0A0A2H3XF41_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008782870.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-133FAR1-related sequence 5