PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937273.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 362aa    MW: 41401.2 Da    PI: 4.7316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937273.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1899149155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+G+r ++ +g+W AeIrdp++     r++lg+f taeeAa+a++  +++++g
  XP_010937273.1  99 SQYRGIRLRP-WGKWTAEIRDPYK---GVRVWLGTFNTAEEAARAYDVEARRIRG 149
                     78********.**********865...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.64E-3299159No hitNo description
PfamPF008471.1E-1099149IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2299157IPR016177DNA-binding domain
PROSITE profilePS5103223.235100157IPR001471AP2/ERF domain
SMARTSM003802.3E-35100163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-31100158IPR001471AP2/ERF domain
PRINTSPR003674.1E-11101112IPR001471AP2/ERF domain
PRINTSPR003674.1E-11123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MCGGAIISDF KPAGSRRRTA DYMWLDRKKG RKHEVVEIED DFEADFEEFE DESEEEKEID  60
VMPFASGSKV PFPRELSTNL TSVDCGRYVS KSAKRKRNSQ YRGIRLRPWG KWTAEIRDPY  120
KGVRVWLGTF NTAEEAARAY DVEARRIRGK KAKVNFPEAS ASAQKRRHEQ TLQAPKLAIS  180
EKHKFNQSCL NDLDHDFYST VEHKEVEELT KLEFLNSLPS LESFPLSVCA EFVNSLSDQR  240
SNSMDCLDFG WGRETRTSEI TSLLSPTIAE GNESGFLEHC SPQKKLKNNS REAMPTIEDS  300
AMKFFEELSD FNTYMKFLQI PCIEESSDES IDSLFSSEVA QEGLSTLDLW SFDDLPMEGS  360
VY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-20100157260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-2097157263ATERF1
3gcc_A8e-2097157263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937273.10.0ethylene-responsive transcription factor 1
RefseqXP_019710118.10.0ethylene-responsive transcription factor 1
TrEMBLA0A2H3XFS21e-141A0A2H3XFS2_PHODC; ethylene-responsive transcription factor 1-like
STRINGXP_008783120.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-35related to AP2 12