PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937176.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 399aa    MW: 43893.2 Da    PI: 6.9143
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937176.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-16121166147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010937176.1 121 RGHWRPAEDSKLRELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 166
                      899*****************************.***********996 PP
2Myb_DNA-binding54.33.1e-17173216146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_010937176.1 173 RRAFSEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 216
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.147116167IPR017930Myb domain
SMARTSM007174.2E-14120169IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-27121214IPR009057Homeodomain-like
PfamPF002491.7E-15121166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-25122174IPR009057Homeodomain-like
CDDcd001674.29E-13124165No hitNo description
PROSITE profilePS5129426.724168222IPR017930Myb domain
SMARTSM007171.8E-14172220IPR001005SANT/Myb domain
PfamPF002495.0E-14173215IPR001005SANT/Myb domain
CDDcd001671.06E-11175215No hitNo description
Gene3DG3DSA:1.10.10.601.5E-20175221IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MALQQCGGSE GMDTRWGFRN YSSSPSSSKG VFADISSLSI NPTTSAGNHP CTKSSEKTSW  60
TFPFPQKSEV GHKCSDGSDG SGEKEPSAIG EESPDGENTT NEGSLGGKET VDCGQSKLCA  120
RGHWRPAEDS KLRELVAIYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFSEEE  180
EEKLMAAHRL YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KYREQSNAYR RRKLSQAVQR  240
RLEEAATTTT TTTTAAVCGF GRCPSSSFTF PAAIDGSIGS HHMTLGVGDS LSSHDGFYIQ  300
QTPFDFFSGS RGHDNANFNS NSSWDWPRDD SFMGFYHHPP FMFAMQQPSH ASHYSDSTAS  360
AASRVSALES SSSDENKEGS HFEATVSPTF IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-321212217107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937176.10.0transcription factor CSA
TrEMBLA0A2H3XHD60.0A0A2H3XHD6_PHODC; transcription factor CSA-like
STRINGXP_008783843.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-75myb domain protein 105