PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937134.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 327aa    MW: 36594.1 Da    PI: 8.3094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937134.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv +++++G+g+Wk+++   g+ R+ k+c++rw +yl
   XP_010937134.1 14 KGPWTPEEDLVLVSYIQKHGPGNWKAVPTNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.21.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_010937134.1  67 RGNFTEQEEKLIIHLQALLGNR-WSAIASYLP-ERTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.167961IPR017930Myb domain
SuperFamilySSF466895.74E-3111108IPR009057Homeodomain-like
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
PfamPF002494.6E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-241568IPR009057Homeodomain-like
CDDcd001678.01E-111661No hitNo description
PROSITE profilePS5129425.31362116IPR017930Myb domain
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2569117IPR009057Homeodomain-like
CDDcd001671.04E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRPPYCDKV GVKKGPWTPE EDLVLVSYIQ KHGPGNWKAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKLIIH LQALLGNRWS AIASYLPERT DNDIKNYWNT HLRKKLKKLQ  120
ASNDSSMSHG LSSDQSISKG QWERRLQTDI HMAKQALREA LSLGKTNRPT ELMKPSNGSY  180
SFTKPSQPAT SSSTTTYASS TENISRLLKG WMKDPPKPRA AQANSESTQH SINKAVGTDS  240
SSSEEESASV ANNNDRITVP NLFESLLNFD SSTQEMSETS LFQCESKPRS EAQVPLSLLE  300
TWLLDEGFVQ GEVELIDMPL GETSELI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-27141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-271411627128MYB TRANSFORMING PROTEIN
1mse_C5e-27141164105C-Myb DNA-Binding Domain
1msf_C5e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937134.20.0myb-related protein 306 isoform X1
SwissprotP813921e-113MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2H3XIA41e-169A0A2H3XIA4_PHODC; myb-related protein 306
STRINGXP_008784211.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-102myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]