PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | AP2 | ||||||||
Protein Properties | Length: 381aa MW: 40914.5 Da PI: 5.1714 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.5 | 1.9e-14 | 196 | 255 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ k++g+++A+++d s+ g ++ k+++lg+++++e+Aa+a++ a++k++g XP_010937078.1 196 SSYHGVTKLKWSGKFEAHLWDnTSQvEGrkRKgKHVYLGSYDSEEKAARAHDLAALKYWG 255 679******************666696675336*************************98 PP | |||||||
2 | AP2 | 52.8 | 1e-16 | 300 | 353 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.kr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I + g r k ++lg+f+t+eeAa+a++ a+ +l+g XP_010937078.1 300 SIYRGVTRRK-DGKWQARIGRV---GeSRdaKDIYLGTFDTEEEAAEAYDIAAIELRG 353 57*****999.9*******998...443347*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-14 | 196 | 267 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.9E-12 | 196 | 255 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.31E-17 | 196 | 267 | No hit | No description |
SMART | SM00380 | 2.8E-23 | 197 | 271 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-14 | 197 | 266 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.965 | 197 | 265 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-11 | 300 | 353 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-18 | 300 | 363 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.10E-23 | 300 | 363 | No hit | No description |
SMART | SM00380 | 6.7E-29 | 301 | 367 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-19 | 301 | 361 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.335 | 301 | 361 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 302 | 313 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-5 | 327 | 343 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MSQAERSRNP SEDATAPKIP APLLPSLNDS GESLDATPAI EKTVVEPSEA AGPQEDAAPK 60 VDSVAVSAAE EKSDPLEVTS EEKVGSLEDA AVGNEPVRPE VPSRNGEDHN AKKAGSSEAT 120 DCRSLVVSLD APEKSAGGGE VLDATSTAAE KKTDCIEVAN GNGPVVALAA SGKSPEKKVG 180 ILLAAAMKKY AAPRSSSYHG VTKLKWSGKF EAHLWDNTSQ VEGRKRKGKH VYLGSYDSEE 240 KAARAHDLAA LKYWGASTNA KLNFPVSDYE KEIETMKNMS QEEYVAYVRR KSSCFSRGAS 300 IYRGVTRRKD GKWQARIGRV GESRDAKDIY LGTFDTEEEA AEAYDIAAIE LRGVHAVTNF 360 DISNYCEGGL KRLEGPCKLE M |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937078.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
TrEMBL | A0A2H3Z407 | 0.0 | A0A2H3Z407_PHODC; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | XP_008808053.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 2e-66 | AP2 family protein |