PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937067.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31981.8 Da    PI: 7.5426
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937067.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.4e-1883136356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ +++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_010937067.1  83 KKKRLNLEQVRTLERNFEMGNKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 136
                     45568889*********************************************9 PP
2HD-ZIP_I/II127.94.3e-4182172191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekk+rl+ eqv++LE++Fe+ +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLkr+++a+k+en++L++++++L++e+
  XP_010937067.1  82 EKKKRLNLEQVRTLERNFEMGNKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKRQFEAVKAENDALKAQNKKLQAEI 172
                     69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.93E-1976140IPR009057Homeodomain-like
PROSITE profilePS5007117.00678138IPR001356Homeobox domain
SMARTSM003893.5E-1681142IPR001356Homeobox domain
CDDcd000863.19E-1583139No hitNo description
PfamPF000464.6E-1583136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-1886146IPR009057Homeodomain-like
PRINTSPR000311.6E-5109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5118134IPR000047Helix-turn-helix motif
PfamPF021834.8E-15138178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MFNNQITCNG MPASFPTNFL LPHEESHHPP TSLSPLLPTN PQDFRGVATM LGKRSMSFSG  60
VEACEAMNAE DELSDDCSQV AEKKKRLNLE QVRTLERNFE MGNKLEPERK IQLARALGLQ  120
PRQIAIWFQN RRARWKTKQL EKDYDALKRQ FEAVKAENDA LKAQNKKLQA EILALKGRER  180
TEPINLNKET EGSCSNKSEN SSDINLGTSR TPATGSPSNP HQSRSFLAYR SPSVAQLLQS  240
SSKAETQGPK MEHGIQEENF NMFCSIEDQT AFWSWSEQHN FH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937067.10.0homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC032e-95ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2H3XIS10.0A0A2H3XIS1_PHODC; homeobox-leucine zipper protein ATHB-13-like
STRINGXP_008784419.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-90HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]