PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936937.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRF | ||||||||
Protein Properties | Length: 304aa MW: 33887.7 Da PI: 6.8921 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.9 | 1.8e-23 | 82 | 125 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg+ srk++e XP_010936937.1 82 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKRSSRKHVE 125 79****************************************97 PP | |||||||
2 | QLQ | 59 | 1.4e-20 | 15 | 50 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+q+L++Q+l++KyLaa+ P+P +L+++i++ XP_010936937.1 15 PFTESQWQELEHQALIFKYLAAGIPIPNDLILPIRR 50 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.7E-11 | 14 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.7E-15 | 15 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.949 | 15 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.028 | 82 | 126 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.2E-19 | 83 | 125 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MMMMIGGNGS RSRYPFTESQ WQELEHQALI FKYLAAGIPI PNDLILPIRR SLLLDSPTLG 60 FPHPPSIGWG CFQMGYGRKV EDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGKRSS 120 RKHVELSLAS NPTSAQLSSP YSPLLSLSPP EAHHALFPCS SSSGSPGIGF STHNNIPYSH 180 LDTACLSADN SNREFYGLKK DVNEYNFFSE ASGAEREGKF RPLGLTSMDE SQQSSNFAVA 240 FASGEVKAVE LEDSQNPKPF HCFFDEWPQR GTGSCISLEE DRSQQASYSN TQLSISSSLY 300 HNDG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936937.1 | 0.0 | growth-regulating factor 1 | ||||
TrEMBL | A0A3Q0HQP2 | 1e-131 | A0A3Q0HQP2_PHODC; growth-regulating factor 1-like | ||||
STRING | XP_008777426.1 | 1e-133 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-51 | growth-regulating factor 5 |