PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936847.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 573aa    MW: 64543 Da    PI: 7.6224
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936847.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-201771256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    r+ +++t++q++eLe++F+ +++p++++r +L++ lgL+ rq+k+WFqN+R+++k
  XP_010936847.1 17 RRCQRHTPKQIQELEAMFKICPHPDEKQRMQLSQDLGLEPRQIKFWFQNKRTQMK 71
                    555789**********************************************998 PP
2START159.52.6e-502124342206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     la +a++el+k+++ +ep+Wvk+     e +  +++ ++f++ +       +++ea+r+sgvv+m+++ lv  + d + +W e ++     a+ +
  XP_010936847.1 212 LATRAMEELIKLVQTDEPLWVKVGhdgrEVLHLETYERIFPRPGQqfkyldFHSEASRDSGVVTMNSTSLVDMFTDAS-KWAELFPtivsNAKNI 305
                     57899*******************76666666666666666544489*********************9999999999.*****999999***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+ +g      g+l+lm+ elq+lsp+ p R+f f+Ry+ q ++g w+ivdvSvd + +++  s++ R   lpSg+li+ ++ng skv wveh+
  XP_010936847.1 306 EVLATGiagsksGTLVLMYEELQVLSPVIPtREFCFLRYCHQIQEGLWAIVDVSVDYPGENQLASQSWR---LPSGCLIQGMPNGCSKVNWVEHM 397
                     *************************************************************99999999...*********************** PP

                     E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +++++   h+l+r lv+sg+a+ga++w++tlqr ce+
  XP_010936847.1 398 EVDAKNRiHQLYRNLVHSGMAFGAQRWLSTLQRMCER 434
                     ***98756***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-21467IPR009057Homeodomain-like
SuperFamilySSF466894.18E-19872IPR009057Homeodomain-like
PROSITE profilePS5007116.6821373IPR001356Homeobox domain
SMARTSM003898.6E-191577IPR001356Homeobox domain
CDDcd000861.44E-171674No hitNo description
PfamPF000464.3E-181771IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084847.661202437IPR002913START domain
SuperFamilySSF559614.81E-36204435No hitNo description
CDDcd088758.80E-109206433No hitNo description
SMARTSM002342.5E-38211434IPR002913START domain
PfamPF018522.8E-43212434IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-7265433IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MDCGDEPEMP EQQGGKRRCQ RHTPKQIQEL EAMFKICPHP DEKQRMQLSQ DLGLEPRQIK  60
FWFQNKRTQM KAHHERTDNC TLRAENDKVR CENIAMKEVL KNAICPSCGG PPTNEDSSVI  120
EQELRMENAR LKEELDRVSS FASKYLGRPI TQLPLDQPLA MSPPDLSMRG YSNHGPSSSV  180
HLDLLSGSSS TVIPFPFPAA VSEIEKPVML DLATRAMEEL IKLVQTDEPL WVKVGHDGRE  240
VLHLETYERI FPRPGQQFKY LDFHSEASRD SGVVTMNSTS LVDMFTDASK WAELFPTIVS  300
NAKNIEVLAT GIAGSKSGTL VLMYEELQVL SPVIPTREFC FLRYCHQIQE GLWAIVDVSV  360
DYPGENQLAS QSWRLPSGCL IQGMPNGCSK VNWVEHMEVD AKNRIHQLYR NLVHSGMAFG  420
AQRWLSTLQR MCERFACLRV TGISSRDLEG VIPGPDGKRS MMTLAQRMVN NFCARITASN  480
NHGHVWTNPS GFTDVGIRLT VYRSPGPSDY PSGLILSATT SIWLPLPSQR VFSYIKDAKT  540
RAECRRLHVS QMVRIKGTAF LCFVLSILAR ATC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123766.10.0homeobox-leucine zipper protein ROC8 isoform X3
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2H3XRW70.0A0A2H3XRW7_PHODC; homeobox-leucine zipper protein ROC8-like isoform X2
STRINGXP_008787891.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11