PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936845.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 698aa MW: 77269.2 Da PI: 6.3092 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.2 | 1.8e-20 | 17 | 71 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ +++t++q++eLe++F+ +++p++++r +L++ lgL+ rq+k+WFqN+R+++k XP_010936845.1 17 RRCQRHTPKQIQELEAMFKICPHPDEKQRMQLSQDLGLEPRQIKFWFQNKRTQMK 71 555789**********************************************998 PP | |||||||
2 | START | 158.9 | 4e-50 | 212 | 434 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la +a++el+k+++ +ep+Wvk+ e + +++ ++f++ + +++ea+r+sgvv+m+++ lv + d + +W e ++ a+ + XP_010936845.1 212 LATRAMEELIKLVQTDEPLWVKVGhdgrEVLHLETYERIFPRPGQqfkyldFHSEASRDSGVVTMNSTSLVDMFTDAS-KWAELFPtivsNAKNI 305 57899*******************76666666666666666544489*********************9999999999.*****999999***** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+ +g g+l+lm+ elq+lsp+ p R+f f+Ry+ q ++g w+ivdvSvd + +++ s++ R lpSg+li+ ++ng skv wveh+ XP_010936845.1 306 EVLATGiagsksGTLVLMYEELQVLSPVIPtREFCFLRYCHQIQEGLWAIVDVSVDYPGENQLASQSWR---LPSGCLIQGMPNGCSKVNWVEHM 397 *************************************************************99999999...*********************** PP E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +++++ h+l+r lv+sg+a+ga++w++tlqr ce+ XP_010936845.1 398 EVDAKNRiHQLYRNLVHSGMAFGAQRWLSTLQRMCER 434 ***98756***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-21 | 4 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.43E-19 | 8 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.682 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-19 | 15 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.21E-18 | 16 | 74 | No hit | No description |
Pfam | PF00046 | 5.6E-18 | 17 | 71 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 47.661 | 202 | 437 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.42E-36 | 204 | 435 | No hit | No description |
CDD | cd08875 | 1.12E-107 | 206 | 433 | No hit | No description |
SMART | SM00234 | 2.5E-38 | 211 | 434 | IPR002913 | START domain |
Pfam | PF01852 | 4.2E-43 | 212 | 434 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.7E-7 | 265 | 433 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.07E-13 | 455 | 687 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MDCGDEPEMP EQQGGKRRCQ RHTPKQIQEL EAMFKICPHP DEKQRMQLSQ DLGLEPRQIK 60 FWFQNKRTQM KAHHERTDNC TLRAENDKVR CENIAMKEVL KNAICPSCGG PPTNEDSSVI 120 EQELRMENAR LKEELDRVSS FASKYLGRPI TQLPLDQPLA MSPPDLSMRG YSNHGPSSSV 180 HLDLLSGSSS TVIPFPFPAA VSEIEKPVML DLATRAMEEL IKLVQTDEPL WVKVGHDGRE 240 VLHLETYERI FPRPGQQFKY LDFHSEASRD SGVVTMNSTS LVDMFTDASK WAELFPTIVS 300 NAKNIEVLAT GIAGSKSGTL VLMYEELQVL SPVIPTREFC FLRYCHQIQE GLWAIVDVSV 360 DYPGENQLAS QSWRLPSGCL IQGMPNGCSK VNWVEHMEVD AKNRIHQLYR NLVHSGMAFG 420 AQRWLSTLQR MCERFACLRV TGISSRDLEG VIPGPDGKRS MMTLAQRMVN NFCARITASN 480 NHGHVWTNPS GFTDVGIRLT VYRSPGPSDY PSGLILSATT SIWLPLPSQR VFSYIKDAKT 540 RAEWDVLSNG NSVQEVARIT NGSHQGNCIS MLRTLNSSQS NMLILQESCI DASVSLTAYA 600 TVDLPSLDMV MSGVDPSKIP LLPSGFAILP DGQPNGEGAS TSSNPMGVAS GSLVTVLFQL 660 LVSSSPSAKL DIETVTTITQ LINATVQQIK VSLNCPSI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029123764.1 | 0.0 | homeobox-leucine zipper protein ROC8 isoform X1 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A2H3XS18 | 0.0 | A0A2H3XS18_PHODC; homeobox-leucine zipper protein ROC8-like isoform X1 | ||||
STRING | XP_008787891.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |