PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936699.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10828.1 Da PI: 9.577 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.6e-09 | 13 | 57 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ +l+ +a + + ++ +W+ +ar +g g++++++k ++ XP_010936699.1 13 SWTPKQNKLFERALAVYDKDtpdRWHNVARAVG-GKSAEEVKRHYE 57 7********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.913 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 6.3E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.77E-13 | 12 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 13 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-7 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-6 | 14 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MASGSLSRSS VSSWTPKQNK LFERALAVYD KDTPDRWHNV ARAVGGKSAE EVKRHYELLV 60 EDLKNIESGQ VPFPNYNIRP SASDEEQRLR NLKLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-36 | 1 | 94 | 1 | 92 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936699.1 | 4e-65 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 5e-40 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2H3YB93 | 5e-54 | A0A2H3YB93_PHODC; protein RADIALIS-like 3 | ||||
STRING | XP_008795931.1 | 9e-55 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-38 | RAD-like 6 |