PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936695.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 376aa    MW: 41658.6 Da    PI: 6.8755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936695.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.7e-10185232455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR+ri +++  L+el+P +    +    Ka iL + ++Y++sLq
  XP_010936695.1 185 SHSLAERVRRERISERMKYLQELVPGC----NNITGKAGILDQIINYVQSLQ 232
                     8**************************....89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-17179249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-10179236No hitNo description
PROSITE profilePS5088815.275181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16181247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-8185232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-8187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVRWLVAPPS DLSVLDPQRG CLNGQQQHQQ QLAHIGYVVP HTTSMQSFHS PNDDKRSRNI  60
SYIHDQIGDH GNGWPNLAGT KYLTIGAATT GEEEKSIKEQ SDNSRKRKAE NISHQKVGCG  120
NTAEDGKKHK RVKEDRVRGG ETAAKESPRA NNKREASGDA SKENVEPPKT DYIHVRARRG  180
QATDSHSLAE RVRRERISER MKYLQELVPG CNNITGKAGI LDQIINYVQS LQRQVEFLSM  240
NLAAVNPRLD FDIDHFFNRE INVACNSGVM PVTDMSSEQL DPSYVQFTCL HPTSACCGLD  300
MAMDSSDIVL HRTMSLPASV PGPILDSSLN VHGSSSSWNT GLQNLYGVEV LQGRGPAFPF  360
QSLQGDILPC NLEMEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936695.10.0transcription factor bHLH63 isoform X2
TrEMBLA0A2H3XJW10.0A0A2H3XJW1_PHODC; transcription factor bHLH63-like
STRINGXP_008784898.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.17e-54cryptochrome-interacting basic-helix-loop-helix 1