PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936677.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 854aa    MW: 94716.5 Da    PI: 4.8396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936677.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10690732246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW++ + el+++a++q+G++ ++ I + ++ +Rt+ q+k+++ +
   XP_010936677.1 690 VRWSKADTELFYQAIRQFGTD-FAMIQQLFP-NRTRHQVKLKFKN 732
                      59*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159639.6E-29682767No hitNo description
PROSITE profilePS5129310.603687738IPR017884SANT domain
SMARTSM007171.4E-9688736IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-6691733IPR009057Homeodomain-like
SuperFamilySSF466892.62E-10691738IPR009057Homeodomain-like
CDDcd001671.58E-7691732No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MFFSTDSLDN LLQPTSTNAR AMGRFKPKAM QPQNKKLVTP SSAVLGVDKS VSSLNLKSSS  60
SSLEAVPSKL HTTQEPLSLI NESVVHYEAS QCGVAISEKG KNSQSDLDKS EAEAGAVISG  120
MDSLDDILFL PDRTSDSADH PEASHCKDLH IDGEKEEASQ HDQERPVESA DTFFSTESLD  180
DSFQHGPTIV SYQDGPHVAQ SDGNFQAIPE KPAEEIMMMP FGMKSLDDIS FSPSAAAVKQ  240
VGKFQPKLAS RPKGGKAKSV SFALPNASET TAPSVETCSE GNFTRTDPPI GDVMNDGYLD  300
NHQQSSSVNY DFNGDFQMDD GKLEEEDISE SSGLESFNTL LSLPMSTAAR SVGKFQPKPS  360
ARTENVKSNA SAVQTGAMEC VQCECDSLPP EAESLEVHAS GFPAHSLVDS AMPMPSELAQ  420
EQAELSETCT LEAATLGGRK TTQTIEISSE RDNHVSGERE PTELLQDICV EAHSPNVEEL  480
TQLIQEEKHN SETVEDIAAS KPSRKLRKQI YMHGTGKPEG GSDEDQSDDE YRGEDVPKKK  540
RVPKKSKGKM TEKKKSGKKR KRASGKPDSI SEELPKKRFP RGTRRKRRQV NKVLLETPED  600
EIDRRQLRIK DLIMLAEAKE RISSKEAATL RKSFPNQSST GSFPSRTYLD EGNLFGEEEE  660
QNLDGEGNHN IQPNSTKLNY HSYMNRPQSV RWSKADTELF YQAIRQFGTD FAMIQQLFPN  720
RTRHQVKLKF KNEERKHPLQ VHDALVHRSK DHAHFERVIL QLQTQAEQNS HKETTGDPQT  780
ASQDVAGEYE EEGGKLNKEE EANGWGGEVR SPADSDWKFE APDQPELAEY ESVYDWDAGA  840
SYPHDMEKDT FTEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1538560KKRVPKKSKGKMTEKKKSGKKRK
2542561PKKSKGKMTEKKKSGKKRKR
3556562GKKRKRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936674.10.0uncharacterized protein LOC105056239 isoform X5
TrEMBLA0A3Q0HWR40.0A0A3Q0HWR4_PHODC; uncharacterized protein LOC103703755 isoform X3
STRINGXP_008784941.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-37MYB_related family protein