PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936676.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 882aa    MW: 97763.5 Da    PI: 4.7098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936676.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10718760246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW++ + el+++a++q+G++ ++ I + ++ +Rt+ q+k+++ +
   XP_010936676.1 718 VRWSKADTELFYQAIRQFGTD-FAMIQQLFP-NRTRHQVKLKFKN 760
                      59*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.0E-28710795No hitNo description
PROSITE profilePS5129310.603715766IPR017884SANT domain
SMARTSM007171.4E-9716764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-6719761IPR009057Homeodomain-like
CDDcd001671.65E-7719760No hitNo description
SuperFamilySSF466892.69E-10719766IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MNSEDLISNI DNGEGLQQDQ RNSGEDADMF FSTDSLDNLL QPTSTNARAM GRFKPKAMQP  60
QNKKLVTPSS AVLGVDKSVS SLNLKSSSSS LEAVPSKLHT TQEPLSLINE SVVHYEASQC  120
GVAISEKGKN SQSDLDKSEA EAGAVISGMD SLDDILFLPD RTSDSADHPE ASHCKDLHID  180
GEKEEASQHD QERPVESADT FFSTESLDDS FQHGPTIVSY QDGPHVAQSD GNFQAIPEKP  240
AEEIMMMPFG MKSLDDISFS PSAAAVKQVG KFQPKLASRP KGGKAKSVSF ALPNASETTA  300
PSVETCSEGN FTRTDPPIGD VMNDGYLDNH QQSSSVNYDF NGDFQMDDGK LEEEDISESS  360
GLESFNTLLS LPMSTAARSV GKFQPKPSAR TENVKSNASA VQTGAMECVQ CECDSLPPEA  420
ESLEVHASGF PAHSLVDSAM PMPSELAQEQ AELSETCTLE AATLGGRKTT QTIEISSERD  480
NHVSGEREPT ELLQDICVEA HSPNVEELTQ LIQEEKHNSE TVEDIAASKP SRKLRKQIYM  540
HGTGKPEGGS DEDQSDDEYR GEDVPKKKRV PKKSKGKMTE KKKSGKKRKR ASGKPDSISE  600
ELPKKRFPRG TRRKRRQVNK VLLETPEDEI DRRQLRIKDL IMLAEAKERI SSKEAATLRK  660
SFPNQSSTGS FPSRTYLDEG NLFGEEEEQN LDGEGNHNIQ PNSTKLNYHS YMNRPQSVRW  720
SKADTELFYQ AIRQFGTDFA MIQQLFPNRT RHQVKLKFKN EERKHPLQVH DALVHRSKDH  780
AHFERVILQL QTQAEQNSHK ETTGDPQTAS QDVAGEYEEE GGKLNKEEEA NGWGGEVRSP  840
ADSDWKFEAP DQPELAEYES VYDWDAGASY PHDMEKDTFT EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S9e-11679791369489Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S9e-11679791369489Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S9e-11679791369489Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S9e-11679791369489Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1566588KKRVPKKSKGKMTEKKKSGKKRK
2570589PKKSKGKMTEKKKSGKKRKR
3584590GKKRKRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936674.10.0uncharacterized protein LOC105056239 isoform X5
TrEMBLA0A2H3XKB80.0A0A2H3XKB8_PHODC; uncharacterized protein LOC103703755 isoform X1
TrEMBLA0A3Q0HWR40.0A0A3Q0HWR4_PHODC; uncharacterized protein LOC103703755 isoform X3
STRINGXP_008784941.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-37MYB_related family protein