PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936675.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 956aa MW: 106055 Da PI: 4.6833

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936675.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.8e-10	792	834	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ + el+++a++q+G++ ++ I + ++ +Rt+ q+k+++ + XP_010936675.1 792 VRWSKADTELFYQAIRQFGTD-FAMIQQLFP-NRTRHQVKLKFKN 834 59*****************.*****.********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.1E-28	784	869	No hit	No description
PROSITE profile	PS51293	10.603	789	840	IPR017884	SANT domain
SMART	SM00717	1.4E-9	790	838	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.99E-10	793	840	IPR009057	Homeodomain-like
CDD	cd00167	1.83E-7	793	834	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.1E-6	793	835	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MDNMIPDLDS IDDILLPPPV ATEQTLGKFR PKLHAKTTKM TPVSSSISDS TQPIQLKDSY 60 PDPKHQEHSS VPPLRIADLY TIASNNHVTQ ESVSQSKTMN SEDLISNIDN GEGLQQDQRN 120 SGEDADMFFS TDSLDNLLQP TSTNARAMGR FKPKAMQPQN KKLVTPSSAV LGVDKSVSSL 180 NLKSSSSSLE AVPSKLHTTQ EPLSLINESV VHYEASQCGV AISEKGKNSQ SDLDKSEAEA 240 GAVISGMDSL DDILFLPDRT SDSADHPEAS HCKDLHIDGE KEEASQHDQE RPVESADTFF 300 STESLDDSFQ HGPTIVSYQD GPHVAQSDGN FQAIPEKPAE EIMMMPFGMK SLDDISFSPS 360 AAAVKQVGKF QPKLASRPKG GKAKSVSFAL PNASETTAPS VETCSEGNFT RTDPPIGDVM 420 NDGYLDNHQQ SSSVNYDFNG DFQMDDGKLE EEDISESSGL ESFNTLLSLP MSTAVQTGAM 480 ECVQCECDSL PPEAESLEVH ASGFPAHSLV DSAMPMPSEL AQEQAELSET CTLEAATLGG 540 RKTTQTIEIS SERDNHVSGE REPTELLQDI CVEAHSPNVE ELTQLIQEEK HNSETVEDIA 600 ASKPSRKLRK QIYMHGTGKP EGGSDEDQSD DEYRGEDVPK KKRVPKKSKG KMTEKKKSGK 660 KRKRASGKPD SISEELPKKR FPRGTRRKRR QVNKVLLETP EDEIDRRQLR IKDLIMLAEA 720 KERISSKEAA TLRKSFPNQS STGSFPSRTY LDEGNLFGEE EEQNLDGEGN HNIQPNSTKL 780 NYHSYMNRPQ SVRWSKADTE LFYQAIRQFG TDFAMIQQLF PNRTRHQVKL KFKNEERKHP 840 LQVHDALVHR SKDHAHFERV ILQLQTQAEQ NSHKETTGDP QTASQDVAGE YEEEGGKLNK 900 EEEANGWGGE VRSPADSDWK FEAPDQPELA EYESVYDWDA GASYPHDMEK DTFTEF

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MDNMIPDLDS IDDILLPPPV ATEQTLGKFR PKLHAKTTKM TPVSSSISDS TQPIQLKDSY  60
PDPKHQEHSS VPPLRIADLY TIASNNHVTQ ESVSQSKTMN SEDLISNIDN GEGLQQDQRN  120
SGEDADMFFS TDSLDNLLQP TSTNARAMGR FKPKAMQPQN KKLVTPSSAV LGVDKSVSSL  180
NLKSSSSSLE AVPSKLHTTQ EPLSLINESV VHYEASQCGV AISEKGKNSQ SDLDKSEAEA  240
GAVISGMDSL DDILFLPDRT SDSADHPEAS HCKDLHIDGE KEEASQHDQE RPVESADTFF  300
STESLDDSFQ HGPTIVSYQD GPHVAQSDGN FQAIPEKPAE EIMMMPFGMK SLDDISFSPS  360
AAAVKQVGKF QPKLASRPKG GKAKSVSFAL PNASETTAPS VETCSEGNFT RTDPPIGDVM  420
NDGYLDNHQQ SSSVNYDFNG DFQMDDGKLE EEDISESSGL ESFNTLLSLP MSTAVQTGAM  480
ECVQCECDSL PPEAESLEVH ASGFPAHSLV DSAMPMPSEL AQEQAELSET CTLEAATLGG  540
RKTTQTIEIS SERDNHVSGE REPTELLQDI CVEAHSPNVE ELTQLIQEEK HNSETVEDIA  600
ASKPSRKLRK QIYMHGTGKP EGGSDEDQSD DEYRGEDVPK KKRVPKKSKG KMTEKKKSGK  660
KRKRASGKPD SISEELPKKR FPRGTRRKRR QVNKVLLETP EDEIDRRQLR IKDLIMLAEA  720
KERISSKEAA TLRKSFPNQS STGSFPSRTY LDEGNLFGEE EEQNLDGEGN HNIQPNSTKL  780
NYHSYMNRPQ SVRWSKADTE LFYQAIRQFG TDFAMIQQLF PNRTRHQVKL KFKNEERKHP  840
LQVHDALVHR SKDHAHFERV ILQLQTQAEQ NSHKETTGDP QTASQDVAGE YEEEGGKLNK  900
EEEANGWGGE VRSPADSDWK FEAPDQPELA EYESVYDWDA GASYPHDMEK DTFTEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	640	662	KKRVPKKSKGKMTEKKKSGKKRK
2	644	663	PKKSKGKMTEKKKSGKKRKR
3	658	664	GKKRKRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936675.2	0.0	uncharacterized protein LOC105056239 isoform X6
TrEMBL	A0A2H3XKB8	0.0	A0A2H3XKB8_PHODC; uncharacterized protein LOC103703755 isoform X1
STRING	XP_008784941.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-37	MYB_related family protein