PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936674.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 1001aa MW: 111010 Da PI: 4.9893

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936674.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.9e-10	837	879	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ + el+++a++q+G++ ++ I + ++ +Rt+ q+k+++ + XP_010936674.1 837 VRWSKADTELFYQAIRQFGTD-FAMIQQLFP-NRTRHQVKLKFKN 879 59*****************.*****.********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.2E-28	829	914	No hit	No description
PROSITE profile	PS51293	10.603	834	885	IPR017884	SANT domain
SMART	SM00717	1.4E-9	835	883	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.14E-10	838	885	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-6	838	880	IPR009057	Homeodomain-like
CDD	cd00167	1.93E-7	838	879	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MGTFFFSNSH SFTVFGLLFS PFSGRSPATS SSYKPRRRPS TEMEQTLGKF RPKLHAKTTK 60 MTPVSSSISD STQPIQLKDS YPDPKHQEHS SVPPLRIADL YTIASNNHVT QESVSQSKTM 120 NSEDLISNID NGEGLQQDQR NSGEDADMFF STDSLDNLLQ PTSTNARAMG RFKPKAMQPQ 180 NKKLVTPSSA VLGVDKSVSS LNLKSSSSSL EAVPSKLHTT QEPLSLINES VVHYEASQCG 240 VAISEKGKNS QSDLDKSEAE AGAVISGMDS LDDILFLPDR TSDSADHPEA SHCKDLHIDG 300 EKEEASQHDQ ERPVESADTF FSTESLDDSF QHGPTIVSYQ DGPHVAQSDG NFQAIPEKPA 360 EEIMMMPFGM KSLDDISFSP SAAAVKQVGK FQPKLASRPK GGKAKSVSFA LPNASETTAP 420 SVETCSEGNF TRTDPPIGDV MNDGYLDNHQ QSSSVNYDFN GDFQMDDGKL EEEDISESSG 480 LESFNTLLSL PMSTAARSVG KFQPKPSART ENVKSNASAV QTGAMECVQC ECDSLPPEAE 540 SLEVHASGFP AHSLVDSAMP MPSELAQEQA ELSETCTLEA ATLGGRKTTQ TIEISSERDN 600 HVSGEREPTE LLQDICVEAH SPNVEELTQL IQEEKHNSET VEDIAASKPS RKLRKQIYMH 660 GTGKPEGGSD EDQSDDEYRG EDVPKKKRVP KKSKGKMTEK KKSGKKRKRA SGKPDSISEE 720 LPKKRFPRGT RRKRRQVNKV LLETPEDEID RRQLRIKDLI MLAEAKERIS SKEAATLRKS 780 FPNQSSTGSF PSRTYLDEGN LFGEEEEQNL DGEGNHNIQP NSTKLNYHSY MNRPQSVRWS 840 KADTELFYQA IRQFGTDFAM IQQLFPNRTR HQVKLKFKNE ERKHPLQVHD ALVHRSKDHA 900 HFERVILQLQ TQAEQNSHKE TTGDPQTASQ DVAGEYEEEG GKLNKEEEAN GWGGEVRSPA 960 DSDWKFEAPD QPELAEYESV YDWDAGASYP HDMEKDTFTE F

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MGTFFFSNSH SFTVFGLLFS PFSGRSPATS SSYKPRRRPS TEMEQTLGKF RPKLHAKTTK  60
MTPVSSSISD STQPIQLKDS YPDPKHQEHS SVPPLRIADL YTIASNNHVT QESVSQSKTM  120
NSEDLISNID NGEGLQQDQR NSGEDADMFF STDSLDNLLQ PTSTNARAMG RFKPKAMQPQ  180
NKKLVTPSSA VLGVDKSVSS LNLKSSSSSL EAVPSKLHTT QEPLSLINES VVHYEASQCG  240
VAISEKGKNS QSDLDKSEAE AGAVISGMDS LDDILFLPDR TSDSADHPEA SHCKDLHIDG  300
EKEEASQHDQ ERPVESADTF FSTESLDDSF QHGPTIVSYQ DGPHVAQSDG NFQAIPEKPA  360
EEIMMMPFGM KSLDDISFSP SAAAVKQVGK FQPKLASRPK GGKAKSVSFA LPNASETTAP  420
SVETCSEGNF TRTDPPIGDV MNDGYLDNHQ QSSSVNYDFN GDFQMDDGKL EEEDISESSG  480
LESFNTLLSL PMSTAARSVG KFQPKPSART ENVKSNASAV QTGAMECVQC ECDSLPPEAE  540
SLEVHASGFP AHSLVDSAMP MPSELAQEQA ELSETCTLEA ATLGGRKTTQ TIEISSERDN  600
HVSGEREPTE LLQDICVEAH SPNVEELTQL IQEEKHNSET VEDIAASKPS RKLRKQIYMH  660
GTGKPEGGSD EDQSDDEYRG EDVPKKKRVP KKSKGKMTEK KKSGKKRKRA SGKPDSISEE  720
LPKKRFPRGT RRKRRQVNKV LLETPEDEID RRQLRIKDLI MLAEAKERIS SKEAATLRKS  780
FPNQSSTGSF PSRTYLDEGN LFGEEEEQNL DGEGNHNIQP NSTKLNYHSY MNRPQSVRWS  840
KADTELFYQA IRQFGTDFAM IQQLFPNRTR HQVKLKFKNE ERKHPLQVHD ALVHRSKDHA  900
HFERVILQLQ TQAEQNSHKE TTGDPQTASQ DVAGEYEEEG GKLNKEEEAN GWGGEVRSPA  960
DSDWKFEAPD QPELAEYESV YDWDAGASYP HDMEKDTFTE F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	685	707	KKRVPKKSKGKMTEKKKSGKKRK
2	689	708	PKKSKGKMTEKKKSGKKRKR
3	703	709	GKKRKRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936674.1	0.0	uncharacterized protein LOC105056239 isoform X5
TrEMBL	A0A3Q0HWR4	0.0	A0A3Q0HWR4_PHODC; uncharacterized protein LOC103703755 isoform X3
STRING	XP_008784941.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2595	29	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-37	MYB_related family protein