PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936673.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 976aa MW: 108154 Da PI: 4.7423

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936673.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.8e-10	812	854	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ + el+++a++q+G++ ++ I + ++ +Rt+ q+k+++ + XP_010936673.1 812 VRWSKADTELFYQAIRQFGTD-FAMIQQLFP-NRTRHQVKLKFKN 854 59*****************.*****.********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.1E-28	804	889	No hit	No description
PROSITE profile	PS51293	10.603	809	860	IPR017884	SANT domain
SMART	SM00717	1.4E-9	810	858	IPR001005	SANT/Myb domain
CDD	cd00167	1.87E-7	813	854	No hit	No description
SuperFamily	SSF46689	3.07E-10	813	860	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-6	813	855	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MDNMIPDLDS IDDILLPPPV ATEQTLGKFR PKLHAKTTKM TPVSSSISDS TQPIQLKDSY 60 PDPKHQEHSS VPPLRIADLY TIASNNHVTQ ESVSQSKTMN SEDLISNIDN GEGLQQDQRN 120 SGEDADMFFS TDSLDNLLQP TSTNARAMGR FKPKAMQPQN KKLVTPSSAV LGVDKSVSSL 180 NLKSSSSSLE AVPSKLHTTQ EPLSLINESV VHYEASQCGV AISEKGKNSQ SDLDKSEAEA 240 GAVISGMDSL DDILFLPDRT SDSADHPEAS HCKDLHIDGE KEEASQHDQE RPVESADTFF 300 STESLDDSFQ HGPTIVSYQD GPHVAQSDGN FQAIPEKPAE EIMMMPFGMK SLDDISFSPS 360 AAAVKQVGKF QPKLASRPKG GKAKSVSFAL PNASETTAPS VETCSEGNFT RTDPPIGDVM 420 NDGYLDNHQQ SSSVNYDFNG DFQMDDGKLE EEDISESSGL ESFNTLLSLP MSTAGKFQPK 480 PSARTENVKS NASAVQTGAM ECVQCECDSL PPEAESLEVH ASGFPAHSLV DSAMPMPSEL 540 AQEQAELSET CTLEAATLGG RKTTQTIEIS SERDNHVSGE REPTELLQDI CVEAHSPNVE 600 ELTQLIQEEK HNSETVEDIA ASKPSRKLRK QIYMHGTGKP EGGSDEDQSD DEYRGEDVPK 660 KKRVPKKSKG KMTEKKKSGK KRKRASGKPD SISEELPKKR FPRGTRRKRR QVNKVLLETP 720 EDEIDRRQLR IKDLIMLAEA KERISSKEAA TLRKSFPNQS STGSFPSRTY LDEGNLFGEE 780 EEQNLDGEGN HNIQPNSTKL NYHSYMNRPQ SVRWSKADTE LFYQAIRQFG TDFAMIQQLF 840 PNRTRHQVKL KFKNEERKHP LQVHDALVHR SKDHAHFERV ILQLQTQAEQ NSHKETTGDP 900 QTASQDVAGE YEEEGGKLNK EEEANGWGGE VRSPADSDWK FEAPDQPELA EYESVYDWDA 960 GASYPHDMEK DTFTEF

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MDNMIPDLDS IDDILLPPPV ATEQTLGKFR PKLHAKTTKM TPVSSSISDS TQPIQLKDSY  60
PDPKHQEHSS VPPLRIADLY TIASNNHVTQ ESVSQSKTMN SEDLISNIDN GEGLQQDQRN  120
SGEDADMFFS TDSLDNLLQP TSTNARAMGR FKPKAMQPQN KKLVTPSSAV LGVDKSVSSL  180
NLKSSSSSLE AVPSKLHTTQ EPLSLINESV VHYEASQCGV AISEKGKNSQ SDLDKSEAEA  240
GAVISGMDSL DDILFLPDRT SDSADHPEAS HCKDLHIDGE KEEASQHDQE RPVESADTFF  300
STESLDDSFQ HGPTIVSYQD GPHVAQSDGN FQAIPEKPAE EIMMMPFGMK SLDDISFSPS  360
AAAVKQVGKF QPKLASRPKG GKAKSVSFAL PNASETTAPS VETCSEGNFT RTDPPIGDVM  420
NDGYLDNHQQ SSSVNYDFNG DFQMDDGKLE EEDISESSGL ESFNTLLSLP MSTAGKFQPK  480
PSARTENVKS NASAVQTGAM ECVQCECDSL PPEAESLEVH ASGFPAHSLV DSAMPMPSEL  540
AQEQAELSET CTLEAATLGG RKTTQTIEIS SERDNHVSGE REPTELLQDI CVEAHSPNVE  600
ELTQLIQEEK HNSETVEDIA ASKPSRKLRK QIYMHGTGKP EGGSDEDQSD DEYRGEDVPK  660
KKRVPKKSKG KMTEKKKSGK KRKRASGKPD SISEELPKKR FPRGTRRKRR QVNKVLLETP  720
EDEIDRRQLR IKDLIMLAEA KERISSKEAA TLRKSFPNQS STGSFPSRTY LDEGNLFGEE  780
EEQNLDGEGN HNIQPNSTKL NYHSYMNRPQ SVRWSKADTE LFYQAIRQFG TDFAMIQQLF  840
PNRTRHQVKL KFKNEERKHP LQVHDALVHR SKDHAHFERV ILQLQTQAEQ NSHKETTGDP  900
QTASQDVAGE YEEEGGKLNK EEEANGWGGE VRSPADSDWK FEAPDQPELA EYESVYDWDA  960
GASYPHDMEK DTFTEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	660	682	KKRVPKKSKGKMTEKKKSGKKRK
2	664	683	PKKSKGKMTEKKKSGKKRKR
3	678	684	GKKRKRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936673.2	0.0	uncharacterized protein LOC105056239 isoform X4
TrEMBL	A0A2H3XKB8	0.0	A0A2H3XKB8_PHODC; uncharacterized protein LOC103703755 isoform X1
STRING	XP_008784941.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-37	MYB_related family protein