PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936672.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 977aa MW: 108294 Da PI: 4.7794

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936672.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.8e-10	813	855	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ + el+++a++q+G++ ++ I + ++ +Rt+ q+k+++ + XP_010936672.1 813 VRWSKADTELFYQAIRQFGTD-FAMIQQLFP-NRTRHQVKLKFKN 855 59*****************.*****.********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.1E-28	805	890	No hit	No description
PROSITE profile	PS51293	10.603	810	861	IPR017884	SANT domain
SMART	SM00717	1.4E-9	811	859	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.07E-10	814	861	IPR009057	Homeodomain-like
CDD	cd00167	1.88E-7	814	855	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.3E-6	814	856	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MDNMIPDLDS IDDILLPPPV ATEQTLGKFR PKLHAKTTKM TPVSSSISDS TQPIQLKDSY 60 PDPKHQEHSS VPPLRIADLY TIASNNHVTQ ESVSQSKTMN SEDLISNIDN GEGLQQDQRN 120 SGEDADMFFS TDSLDNLLQP TSTNARAMGR FKPKAMQPQN KKLVTPSSAV LGVDKSVSSL 180 NLKSSSSSLE AVPSKLHTTQ EPLSLINESV VHYEASQCGV AISEKGKNSQ SDLDKSEAEA 240 GAVISGMDSL DDILFLPDRT SDHPEASHCK DLHIDGEKEE ASQHDQERPV ESADTFFSTE 300 SLDDSFQHGP TIVSYQDGPH VAQSDGNFQA IPEKPAEEIM MMPFGMKSLD DISFSPSAAA 360 VKQVGKFQPK LASRPKGGKA KSVSFALPNA SETTAPSVET CSEGNFTRTD PPIGDVMNDG 420 YLDNHQQSSS VNYDFNGDFQ MDDGKLEEED ISESSGLESF NTLLSLPMST AARSVGKFQP 480 KPSARTENVK SNASAVQTGA MECVQCECDS LPPEAESLEV HASGFPAHSL VDSAMPMPSE 540 LAQEQAELSE TCTLEAATLG GRKTTQTIEI SSERDNHVSG EREPTELLQD ICVEAHSPNV 600 EELTQLIQEE KHNSETVEDI AASKPSRKLR KQIYMHGTGK PEGGSDEDQS DDEYRGEDVP 660 KKKRVPKKSK GKMTEKKKSG KKRKRASGKP DSISEELPKK RFPRGTRRKR RQVNKVLLET 720 PEDEIDRRQL RIKDLIMLAE AKERISSKEA ATLRKSFPNQ SSTGSFPSRT YLDEGNLFGE 780 EEEQNLDGEG NHNIQPNSTK LNYHSYMNRP QSVRWSKADT ELFYQAIRQF GTDFAMIQQL 840 FPNRTRHQVK LKFKNEERKH PLQVHDALVH RSKDHAHFER VILQLQTQAE QNSHKETTGD 900 PQTASQDVAG EYEEEGGKLN KEEEANGWGG EVRSPADSDW KFEAPDQPEL AEYESVYDWD 960 AGASYPHDME KDTFTEF

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MDNMIPDLDS IDDILLPPPV ATEQTLGKFR PKLHAKTTKM TPVSSSISDS TQPIQLKDSY  60
PDPKHQEHSS VPPLRIADLY TIASNNHVTQ ESVSQSKTMN SEDLISNIDN GEGLQQDQRN  120
SGEDADMFFS TDSLDNLLQP TSTNARAMGR FKPKAMQPQN KKLVTPSSAV LGVDKSVSSL  180
NLKSSSSSLE AVPSKLHTTQ EPLSLINESV VHYEASQCGV AISEKGKNSQ SDLDKSEAEA  240
GAVISGMDSL DDILFLPDRT SDHPEASHCK DLHIDGEKEE ASQHDQERPV ESADTFFSTE  300
SLDDSFQHGP TIVSYQDGPH VAQSDGNFQA IPEKPAEEIM MMPFGMKSLD DISFSPSAAA  360
VKQVGKFQPK LASRPKGGKA KSVSFALPNA SETTAPSVET CSEGNFTRTD PPIGDVMNDG  420
YLDNHQQSSS VNYDFNGDFQ MDDGKLEEED ISESSGLESF NTLLSLPMST AARSVGKFQP  480
KPSARTENVK SNASAVQTGA MECVQCECDS LPPEAESLEV HASGFPAHSL VDSAMPMPSE  540
LAQEQAELSE TCTLEAATLG GRKTTQTIEI SSERDNHVSG EREPTELLQD ICVEAHSPNV  600
EELTQLIQEE KHNSETVEDI AASKPSRKLR KQIYMHGTGK PEGGSDEDQS DDEYRGEDVP  660
KKKRVPKKSK GKMTEKKKSG KKRKRASGKP DSISEELPKK RFPRGTRRKR RQVNKVLLET  720
PEDEIDRRQL RIKDLIMLAE AKERISSKEA ATLRKSFPNQ SSTGSFPSRT YLDEGNLFGE  780
EEEQNLDGEG NHNIQPNSTK LNYHSYMNRP QSVRWSKADT ELFYQAIRQF GTDFAMIQQL  840
FPNRTRHQVK LKFKNEERKH PLQVHDALVH RSKDHAHFER VILQLQTQAE QNSHKETTGD  900
PQTASQDVAG EYEEEGGKLN KEEEANGWGG EVRSPADSDW KFEAPDQPEL AEYESVYDWD  960
AGASYPHDME KDTFTEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	661	683	KKRVPKKSKGKMTEKKKSGKKRK
2	665	684	PKKSKGKMTEKKKSGKKRKR
3	679	685	GKKRKRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936672.2	0.0	uncharacterized protein LOC105056239 isoform X3
TrEMBL	A0A3Q0HWY5	0.0	A0A3Q0HWY5_PHODC; uncharacterized protein LOC103703755 isoform X2
STRING	XP_008784941.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-37	MYB_related family protein