PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936671.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 980aa MW: 108568 Da PI: 4.7618

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936671.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.8e-10	816	858	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ + el+++a++q+G++ ++ I + ++ +Rt+ q+k+++ + XP_010936671.1 816 VRWSKADTELFYQAIRQFGTD-FAMIQQLFP-NRTRHQVKLKFKN 858 59*****************.*****.********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.2E-28	808	893	No hit	No description
PROSITE profile	PS51293	10.603	813	864	IPR017884	SANT domain
SMART	SM00717	1.4E-9	814	862	IPR001005	SANT/Myb domain
CDD	cd00167	1.88E-7	817	858	No hit	No description
SuperFamily	SSF46689	3.07E-10	817	864	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.4E-6	817	859	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MDNMIPDLDS IDDILLPPPV ATEQTLGKFR PKLHAKTTKM TPVSSSISDS TQPIQLKDSY 60 PDPKHQEHSS VPPLRIADLY TIASNNHVTQ ESVSQSKTMN SEDLISNIDN GEGLQQDQRN 120 SGEDADMFFS TDSLDNLLQP TSTNARAMGR FKPKAMQPQN KKLVTPSSAV LGVDKSVSSL 180 NLKSSSSSLE AVPSKLHTTQ EPLSLINESV VHYEASQCGV AISEKGKNSQ SDLDKSEAEA 240 GAVISGMDSL DDILFLPDRT SDSADHPEAS HCKDLHIDGE KEEASQHDQE RPVESADTFF 300 STESLDDSFQ HGPTIVSYQD GPHVAQSDGN FQAIPEKPAE EIMMMPFGMK SLDDISFSPS 360 AAAVKQVGKF QPKLASRPKG GKAKSVSFAL PNASETTAPS VETCSEGNFT RTDPPIGDVM 420 NDGYLDNHQQ SSSVNYDFNG DFQMDDGKLE EEDISESSGL ESFNTLLSLP MSTAARSVGK 480 FQPKPSARTE NVKSNASAVQ TGAMECVQCE CDSLPPEAES LEVHASGFPA HSLVDSAMPM 540 PSELAQEQAE LSETCTLEAA TLGGRKTTQT IEISSERDNH VSGEREPTEL LQDICVEAHS 600 PNVEELTQLI QEEKHNSETV EDIAASKPSR KLRKQIYMHG TGKPEGGSDE DQSDDEYRGE 660 DVPKKKRVPK KSKGKMTEKK KSGKKRKRAS GKPDSISEEL PKKRFPRGTR RKRRQVNKVL 720 LETPEDEIDR RQLRIKDLIM LAEAKERISS KEAATLRKSF PNQSSTGSFP SRTYLDEGNL 780 FGEEEEQNLD GEGNHNIQPN STKLNYHSYM NRPQSVRWSK ADTELFYQAI RQFGTDFAMI 840 QQLFPNRTRH QVKLKFKNEE RKHPLQVHDA LVHRSKDHAH FERVILQLQT QAEQNSHKET 900 TGDPQTASQD VAGEYEEEGG KLNKEEEANG WGGEVRSPAD SDWKFEAPDQ PELAEYESVY 960 DWDAGASYPH DMEKDTFTEF

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MDNMIPDLDS IDDILLPPPV ATEQTLGKFR PKLHAKTTKM TPVSSSISDS TQPIQLKDSY  60
PDPKHQEHSS VPPLRIADLY TIASNNHVTQ ESVSQSKTMN SEDLISNIDN GEGLQQDQRN  120
SGEDADMFFS TDSLDNLLQP TSTNARAMGR FKPKAMQPQN KKLVTPSSAV LGVDKSVSSL  180
NLKSSSSSLE AVPSKLHTTQ EPLSLINESV VHYEASQCGV AISEKGKNSQ SDLDKSEAEA  240
GAVISGMDSL DDILFLPDRT SDSADHPEAS HCKDLHIDGE KEEASQHDQE RPVESADTFF  300
STESLDDSFQ HGPTIVSYQD GPHVAQSDGN FQAIPEKPAE EIMMMPFGMK SLDDISFSPS  360
AAAVKQVGKF QPKLASRPKG GKAKSVSFAL PNASETTAPS VETCSEGNFT RTDPPIGDVM  420
NDGYLDNHQQ SSSVNYDFNG DFQMDDGKLE EEDISESSGL ESFNTLLSLP MSTAARSVGK  480
FQPKPSARTE NVKSNASAVQ TGAMECVQCE CDSLPPEAES LEVHASGFPA HSLVDSAMPM  540
PSELAQEQAE LSETCTLEAA TLGGRKTTQT IEISSERDNH VSGEREPTEL LQDICVEAHS  600
PNVEELTQLI QEEKHNSETV EDIAASKPSR KLRKQIYMHG TGKPEGGSDE DQSDDEYRGE  660
DVPKKKRVPK KSKGKMTEKK KSGKKRKRAS GKPDSISEEL PKKRFPRGTR RKRRQVNKVL  720
LETPEDEIDR RQLRIKDLIM LAEAKERISS KEAATLRKSF PNQSSTGSFP SRTYLDEGNL  780
FGEEEEQNLD GEGNHNIQPN STKLNYHSYM NRPQSVRWSK ADTELFYQAI RQFGTDFAMI  840
QQLFPNRTRH QVKLKFKNEE RKHPLQVHDA LVHRSKDHAH FERVILQLQT QAEQNSHKET  900
TGDPQTASQD VAGEYEEEGG KLNKEEEANG WGGEVRSPAD SDWKFEAPDQ PELAEYESVY  960
DWDAGASYPH DMEKDTFTEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	664	686	KKRVPKKSKGKMTEKKKSGKKRK
2	668	687	PKKSKGKMTEKKKSGKKRKR
3	682	688	GKKRKRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936671.2	0.0	uncharacterized protein LOC105056239 isoform X1
TrEMBL	A0A2H3XKB8	0.0	A0A2H3XKB8_PHODC; uncharacterized protein LOC103703755 isoform X1
STRING	XP_008784941.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-37	MYB_related family protein