PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936645.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 316aa    MW: 36140.7 Da    PI: 6.5002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936645.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
   XP_010936645.1 14 KGLWSPEEDEKLYNHIIRFGIGCWSSVPKQAGLERCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding50.25.9e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
   XP_010936645.1  67 RGNFTQQEEDLIISLHEVLGNR-WSQIAAQLP-GRTDNEIKNFWNS 110
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.293961IPR017930Myb domain
SuperFamilySSF466895.62E-2912108IPR009057Homeodomain-like
SMARTSM007171.5E-111363IPR001005SANT/Myb domain
PfamPF002493.0E-131461IPR001005SANT/Myb domain
CDDcd001676.78E-101761No hitNo description
PROSITE profilePS5129425.24562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2665117IPR009057Homeodomain-like
SMARTSM007171.6E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1467110IPR001005SANT/Myb domain
CDDcd001673.18E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRHPCCTKQ KLRKGLWSPE EDEKLYNHII RFGIGCWSSV PKQAGLERCG KSCRLRWINY  60
LRPDLKRGNF TQQEEDLIIS LHEVLGNRWS QIAAQLPGRT DNEIKNFWNS SLKKKLKQRG  120
IDPITHKPLS ETGAQEEKPK PCVKPIFNPF ASFEYQAAFN PVETNANLFH QFQQTYRPLE  180
QNEFMMNFDN SFTSRPNSVY CDYGEALDIP DSCGIQESLN DGSNWNCNIA AQMSSVLGNE  240
VLNWCSSEIK LESPIRTEFE AYKKRLNPCP GLQHVESSEE FSSYLTTSRS QDLSDACFDI  300
SRGELACELK GNFLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
1h8a_C5e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936645.10.0myb-related protein Hv33
TrEMBLA0A3Q0I0D10.0A0A3Q0I0D1_PHODC; myb-related protein Hv33-like
STRINGXP_008784966.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-79myb domain protein 55