PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010936464.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TCP

Protein Properties

Length: 323aa MW: 36271.6 Da PI: 9.4666

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010936464.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.4	1.1e-29	46	157	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....... 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++ ++ ++ +++ +s + ++ XP_010936464.1 46 GGKDRHSKVRTIRGLRDRRVRLSVPTAIQLYDLQDKLGVNQPSKVVDWLLNAAQHEIDKLPPLQMPPGNFIqfPQSMAVSHKL---APpqapsfd 137 78*************************************************************88888777532222222211...112223444 PP TCP 89 ...................k 89 + XP_010936464.1 138 ptrdgtefihddrtfqlasS 157 55555555555555555321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-28	47	181	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.386	47	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MIRDSREEEL FTKQGGGTNV DGFPVSSRLW SGLKNPRIVR VSRTFGGKDR HSKVRTIRGL 60 RDRRVRLSVP TAIQLYDLQD KLGVNQPSKV VDWLLNAAQH EIDKLPPLQM PPGNFIQFPQ 120 SMAVSHKLAP PQAPSFDPTR DGTEFIHDDR TFQLASSSSV ANGDMLDNNT VQNAMNMVQK 180 STFWNSDVLM KNKEKEAMKE TSIEKGSMIK GNDTGSGLQN NDMSYPSYHH WDPSNAHISY 240 LGSHFSQADG FHNYQPASMF ASYMNPPTEF NAKQYKHLHM DNSASQLLPS NSLRTSLQSG 300 GPSLELLQPN LAFKHRHPQG HQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-18	52	106	1	55	Putative transcription factor PCF6
5zkt_B	3e-18	52	106	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936464.1	0.0	transcription factor TCP13
TrEMBL	A0A2H3ZA71	0.0	A0A2H3ZA71_PHODC; transcription factor TCP13-like
STRING	XP_008810756.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	4e-44	plastid transcription factor 1