PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27980.9 Da PI: 8.0517 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92 | 2.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+ KKA+ELSvLCdaeva+iifs++g++ e++s XP_010936438.1 9 KRIENKINRQVTFSKRRNGLVKKANELSVLCDAEVALIIFSNRGRITEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 99.8 | 3.8e-33 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++++++e+ k+k++ e L ++qR+llGedL++Ls+keL+qLe+q+e slk+iRskK++l+l+q+ +l +ke++lqe+nkaLr++lee XP_010936438.1 82 VPPKETQNSYHEYLKMKARFEFLHHSQRNLLGEDLGPLSVKELEQLENQIEISLKHIRSKKTQLMLDQLCDLERKEQMLQEANKALRRRLEE 173 556789**********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.099 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.2E-32 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.39E-41 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 6.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.5E-29 | 86 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.898 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLVK KANELSVLCD AEVALIIFSN RGRITEFCSS 60 SSMLKTIERY QRCSYNATDA IVPPKETQNS YHEYLKMKAR FEFLHHSQRN LLGEDLGPLS 120 VKELEQLENQ IEISLKHIRS KKTQLMLDQL CDLERKEQML QEANKALRRR LEEDTINSLQ 180 LSWQNGANVV GNAPCDGEPP QTEGFFQPLG CEPSLQIGYQ PVCINQMNTE ATTQHVNGYI 240 PGWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 5e-29 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 5e-29 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 5e-29 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 5e-29 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936438.1 | 0.0 | MADS-box protein EJ2 | ||||
Swissprot | Q8LLR2 | 1e-113 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A2H3ZAT3 | 1e-153 | A0A2H3ZAT3_PHODC; MADS-box protein EJ2 isoform X4 | ||||
STRING | XP_008811033.1 | 1e-152 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2221 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-97 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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