PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27980.9 Da PI: 9.7315 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99 | 1.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeys+ XP_010936437.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 94.2 | 2.2e-31 | 86 | 174 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + ++++++ L++++e Lq++qRhl+Ge+LesL++keLqqLe +L+ +l++iRs++n+ll+++i elq+kek+l+e+n L+++l+e XP_010936437.1 86 KSQGRWCHDYGELRSKVEALQKSQRHLMGEQLESLTFKELQQLELHLDGALRHIRSRRNQLLFDSIAELQRKEKALHEQNSILERRLME 174 55679*******************************************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.702 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-33 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.26E-42 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-27 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.301 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSTN 60 ASMEKILERY QCYSYAERAL VEEDPKSQGR WCHDYGELRS KVEALQKSQR HLMGEQLESL 120 TFKELQQLEL HLDGALRHIR SRRNQLLFDS IAELQRKEKA LHEQNSILER RLMESNGAMA 180 LTEHPRWEPQ GQPQTSSSSP PPYLATDSLP TLSIGRTGGG QVIQPLDREN NRSLPAWMLR 240 PVSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936436.1 | 1e-178 | truncated transcription factor CAULIFLOWER A isoform X2 | ||||
Swissprot | Q6E6S7 | 1e-92 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | Q400H8 | 1e-138 | Q400H8_ELAGV; AP1-like MADS box transcription factor (Fragment) | ||||
STRING | XP_008811038.1 | 1e-120 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 5e-80 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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