PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010936437.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27980.9 Da    PI: 9.7315
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010936437.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.8e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeys+
  XP_010936437.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYST 59
                    79***********************************************96 PP

2K-box94.22.2e-318617412100
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + + ++++++  L++++e Lq++qRhl+Ge+LesL++keLqqLe +L+ +l++iRs++n+ll+++i elq+kek+l+e+n  L+++l+e
  XP_010936437.1  86 KSQGRWCHDYGELRSKVEALQKSQRHLMGEQLESLTFKELQQLELHLDGALRHIRSRRNQLLFDSIAELQRKEKALHEQNSILERRLME 174
                     55679*******************************************************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.702161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-33285IPR002100Transcription factor, MADS-box
CDDcd002653.26E-42276No hitNo description
PRINTSPR004041.1E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2786172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.30188179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSTN  60
ASMEKILERY QCYSYAERAL VEEDPKSQGR WCHDYGELRS KVEALQKSQR HLMGEQLESL  120
TFKELQQLEL HLDGALRHIR SRRNQLLFDS IAELQRKEKA LHEQNSILER RLMESNGAMA  180
LTEHPRWEPQ GQPQTSSSSP PPYLATDSLP TLSIGRTGGG QVIQPLDREN NRSLPAWMLR  240
PVSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-22174173MEF2 CHIMERA
6byy_B9e-22174173MEF2 CHIMERA
6byy_C9e-22174173MEF2 CHIMERA
6byy_D9e-22174173MEF2 CHIMERA
6bz1_A1e-21174173MEF2 CHIMERA
6bz1_B1e-21174173MEF2 CHIMERA
6bz1_C1e-21174173MEF2 CHIMERA
6bz1_D1e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936436.11e-178truncated transcription factor CAULIFLOWER A isoform X2
SwissprotQ6E6S71e-92AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ400H81e-138Q400H8_ELAGV; AP1-like MADS box transcription factor (Fragment)
STRINGXP_008811038.11e-120(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.15e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]